Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016281

Physical Location & Seq

Genomic Coordinates Reverse (-)

2808258 .. 2808859

Gene Structure 602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCATTCCAACTTGAGACGAAGTATAGCTGCTTTAGAAGAGGAATTTGCAAAGGAAGAATCAGAGAAGATGGATGCAATTATTAGTCTTAGAAGAGAAAGGGAAGCAAGGGAGGCTGCTGAGACGTTGCAAACTTCTCTCCTACTGATGCTTCAACAACTGGAGGAAGAGAAATTAGCTGCTGAGCAGAGGGTTTCAGAACTTGAGGATGAATTTAATCGCAAGTTAGAGTACAACAGGAGTCTAGAAGAGTACAAAAGCCAACTGGAAGCTGATTTTAGTACACTGAATGAGGCTCGCAAACGAACAGAAATGGAGAGATTGAGTAGCCAAATCCAGGGGAAACTGAATATCGTTGAGAAGCTGATGAAATTAATTAAAGGGGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

130

Amino Acids

15.25

Weight (kDa)

4.98

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016281)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02882
pyrus_communis	pycom10g26300
rosa_laevigata	RLG00000031229
rosa_multiflora	Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071070
rosa_rugosa	Rorug04G0411800
rosa_samantha	Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana	Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	44, 212
AfaI	GTAC	3 cut(s)	233, 254, 283
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	29, 179, 272, 364
AluI	AGCT	4 cut(s)	29, 179, 272, 364
Alw26I	GTCTC	2 cut(s)	10, 116
ApeKI	GCWGC	3 cut(s)	29, 116, 179
ApoI	RAATTY	2 cut(s)	44, 212
AseI	ATTAAT	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	16, 103, 166
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	10, 116
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	30, 117, 180
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	31, 118, 181
Bme1390I	CCNGG	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	64, 138
BpmI	CTGGAG	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	34, 224
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	165, 270
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	79, 214
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	111, 174
BseNI	ACTGG	2 cut(s)	165, 270
BseXI	GCAGC	3 cut(s)	16, 103, 166
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	10, 116
BsmBI	CGTCTC	2 cut(s)	10, 116
BsmI	GAATGC	1 cut(s)	4
Bsp1720I	GCTNAGC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	112, 175
BsrI	ACTGG	2 cut(s)	165, 270
BssECI	CCNNGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	338
Bst6I	CTCTTC	4 cut(s)	33, 88, 162, 243
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	89, 120, 183
BstF5I	GGATG	2 cut(s)	79, 214
BstMAI	GTCTC	2 cut(s)	10, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	16, 103, 166
BtsCI	GGATG	2 cut(s)	79, 214
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	232, 253, 282
CviJI	RGCY	8 cut(s)	29, 116, 179, 261, 272, 296, 330, 364
CviKI_1	RGCY	8 cut(s)	29, 116, 179, 261, 272, 296, 330, 364
CviQI	GTAC	3 cut(s)	232, 253, 282
DdeI	CTNAG	3 cut(s)	89, 120, 183
Eam1104I	CTCTTC	4 cut(s)	33, 88, 162, 243
EarI	CTCTTC	4 cut(s)	33, 88, 162, 243
EcoRII	CCWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	10, 116
FaiI	YATR	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	30, 117, 180
FokI	GGATG	2 cut(s)	86, 221
Fsp4HI	GCNGC	3 cut(s)	30, 117, 180
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	3 cut(s)	30, 117, 180
GsuI	CTGGAG	1 cut(s)	182
HinfI	GANTC	2 cut(s)	59, 241
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	64, 199
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	4 cut(s)	4, 50, 77, 130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	89, 120, 183
HpySE526I	ACGT	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	146, 223, 251, 323, 350
Lsp1109I	GCAGC	3 cut(s)	16, 103, 166
LweI	GCATC	2 cut(s)	64, 138
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	125
MboII	GAAGA	6 cut(s)	50, 68, 79, 105, 179, 260
MluCI	AATT	6 cut(s)	44, 78, 173, 212, 371, 375
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	34, 106, 157, 183, 199, 286
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	216, 374, 378
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	6
PacI	TTAATTAA	1 cut(s)	378
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	31, 118, 181
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PshBI	ATTAAT	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
RsaI	GTAC	3 cut(s)	233, 254, 283
RsaNI	GTAC	3 cut(s)	232, 253, 282
SaqAI	TTAA	3 cut(s)	216, 374, 378
SatI	GCNGC	3 cut(s)	30, 117, 180
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	5 cut(s)	31, 128, 181, 274, 366
SfaNI	GCATC	2 cut(s)	64, 138
SmlI	CTYRAG	2 cut(s)	13, 203
SmoI	CTYRAG	2 cut(s)	13, 203
Sse9I	AATT	6 cut(s)	44, 78, 173, 212, 371, 375
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	128
TasI	AATT	6 cut(s)	44, 78, 173, 212, 371, 375
TatI	WGTACW	3 cut(s)	231, 252, 281
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	216, 374, 378
Tru9I	TTAA	3 cut(s)	216, 374, 378
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	3 cut(s)	29, 116, 179
TspDTI	ATGAA	2 cut(s)	225, 383
TspRI	CASTG	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	374
XapI	RAATTY	2 cut(s)	44, 212
XbaI	TCTAGA	1 cut(s)	244
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.