FvH4_3g02890

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018810
Physical Location & Seq
Reverse (-)
1542978 .. 1545247
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02890.t2

Sequence Viewer

Length: 729 bp
ATGTCCTCTTTTATTTCCTCGTGCGTGGAAGTAGTTCCAAAATTTTTATCAATGCTCCAAATTTTGAAGAGCTTGATCTTCATGGGAATTTTTTTTGTGTCCTATTCTTTGAACAATGTAAAATCGTTAAGCAAAGTCAACATTGATGTGAGGCCAAACCCAGCAAAGAGTATTCATGCGGTTCATCTGCATTCATACCTTGAGTTTGTCGTTCGTTCTGCTGATGCTGGCCTAATACACAAGCTTTTTACGGTCGTTCAGACGGTTGAATATCTGTCACTTTCAGCTCCGATTTATGGGGATCCTAGAACGCTGAAGGAATATGATCTACCTAGATCTTATAATTTGAAACACTTGGACCTGCTTCTTGAAGCCTGCTGCTCTTGGGAATTCCTGACAAAGTTGCTGAGTTTGTCACCCAATCTGGAATGTCTTGTCTTGGAATGTAACATTAAATGTTCTCTGGAACACTCGGAGGATCACCTAGTTCACCAATGGTGCCTGCCGGATTGTGTGCCTATTTGTCTGTTATGCCTCAAGACCATTTGCATCCGGGGTTTTCAGGGGAGGCCAGATGAGATAGAAATGGTGGAATACTTTTTGAAGCATGGTGAGGTTTTGAGTAATGTCACAATTCATGATAGCACTATTTGTGCAGGAAGTTCAATGCGGGTACTTTCAATGCTTCCAAGGGCTTCAAAATCCTGTCAATTGAAGTTCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

243

Amino Acids

27.4

Weight (kDa)

7.1

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 169 - 212 1.7e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 498
AciI CCGC 2 cut(s) 179, 670
AclWI GGATC 3 cut(s) 296, 309, 486
AcsI RAATTY 4 cut(s) 41, 60, 87, 389
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 1 cut(s) 296
AluBI AGCT 3 cut(s) 72, 244, 287
AluI AGCT 3 cut(s) 72, 244, 287
AlwI GGATC 3 cut(s) 296, 309, 486
AoxI GGCC 3 cut(s) 152, 229, 569
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 4 cut(s) 41, 60, 87, 389
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 4 cut(s) 408, 473, 482, 623
AvaII GGWCC 1 cut(s) 358
BamHI GGATCC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 498
BauI CACGAG 1 cut(s) 19
BbvI GCAGC 1 cut(s) 365
BcnI CCSGG 1 cut(s) 554
BfaI CTAG 3 cut(s) 306, 333, 485
BfuAI ACCTGC 1 cut(s) 369
BglII AGATCT 1 cut(s) 335
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 303, 500
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 2 cut(s) 214, 558
BpuEI CTTGAG 2 cut(s) 221, 521
BpuMI CCSGG 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 553, 689
Bsc4I CCNNNNNNNGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 553, 689
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 154, 231, 571
BshNI GGYRCC 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 506, 553
BslI CCNNNNNNNGG 1 cut(s) 296
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 154, 231, 571
Bsp143I GATC 5 cut(s) 75, 301, 325, 335, 478
BspACI CCGC 2 cut(s) 179, 670
BspANI GGCC 3 cut(s) 154, 231, 571
BspCNI CTCAG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 303, 500
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 3 cut(s) 296, 309, 486
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 498
BssECI CCNNGG 2 cut(s) 553, 689
BssMI GATC 5 cut(s) 75, 301, 325, 335, 478
BssSI CACGAG 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 689
Bst2BI CACGAG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 253, 265
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 229, 376, 503
BstDEI CTNAG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 549
BstKTI GATC 5 cut(s) 78, 304, 328, 338, 481
BstMBI GATC 5 cut(s) 75, 301, 325, 335, 478
BstMCI CGRYCG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 301, 335
BstYI RGATCY 2 cut(s) 301, 335
BsuRI GGCC 3 cut(s) 154, 231, 571
BtsCI GGATG 1 cut(s) 549
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 229, 376, 503
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 674
CviAII CATG 4 cut(s) 82, 176, 608, 638
CviJI RGCY 8 cut(s) 72, 154, 231, 244, 287, 374, 571, 695
CviKI_1 RGCY 8 cut(s) 72, 154, 231, 244, 287, 374, 571, 695
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 1 cut(s) 407
DpnI GATC 5 cut(s) 77, 303, 327, 337, 480
DpnII GATC 5 cut(s) 75, 301, 325, 335, 478
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 689
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 4 cut(s) 85, 179, 611, 641
FaiI YATR 9 cut(s) 83, 177, 196, 297, 324, 342, 532, 609, 639
FatI CATG 4 cut(s) 81, 175, 607, 637
FauI CCCGC 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 1 cut(s) 379
FspBI CTAG 3 cut(s) 306, 333, 485
GluI GCNGC 1 cut(s) 379
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 3 cut(s) 154, 231, 571
HapII CCGG 2 cut(s) 506, 553
Hin1II CATG 4 cut(s) 85, 179, 611, 641
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 242
HpaII CCGG 2 cut(s) 506, 553
HphI GGTGA 4 cut(s) 408, 473, 482, 623
Hpy166II GTNNAC 2 cut(s) 139, 490
Hpy188I TCNGA 3 cut(s) 261, 291, 475
Hpy188III TCNNGA 6 cut(s) 368, 394, 425, 464, 538, 638
Hpy8I GTNNAC 2 cut(s) 139, 490
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 253, 265
HpyCH4V TGCA 3 cut(s) 190, 549, 656
HpyF3I CTNAG 1 cut(s) 407
Hsp92II CATG 4 cut(s) 85, 179, 611, 641
Kzo9I GATC 5 cut(s) 75, 301, 325, 335, 478
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 60, 292
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 214, 558
MaeI CTAG 3 cut(s) 306, 333, 485
MaeIII GTNAC 4 cut(s) 276, 414, 446, 628
MalI GATC 5 cut(s) 77, 303, 327, 337, 480
MboI GATC 5 cut(s) 75, 301, 325, 335, 478
MboII GAAGA 2 cut(s) 70, 79
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 2 cut(s) 301, 335
MluCI AATT 7 cut(s) 41, 60, 87, 343, 389, 633, 710
MnlI CCTC 7 cut(s) 16, 28, 144, 469, 545, 561, 607
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 2 cut(s) 128, 453
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 506, 553
MspR9I CCNGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 554
NdeII GATC 5 cut(s) 75, 301, 325, 335, 478
NlaIII CATG 4 cut(s) 85, 179, 611, 641
NlaIV GGNNCC 2 cut(s) 303, 500
NmuCI GTSAC 3 cut(s) 276, 414, 628
PagI TCATGA 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 380
PsiI TTATAA 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 303, 500
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 2 cut(s) 301, 335
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 128, 453
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 5 cut(s) 75, 301, 325, 335, 478
Sau96I GGNCC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 554
SetI ASST 8 cut(s) 74, 201, 246, 289, 334, 363, 486, 618
SfaNI GCATC 2 cut(s) 214, 558
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 200, 536
SmoI CTYRAG 2 cut(s) 200, 536
Sse9I AATT 7 cut(s) 41, 60, 87, 343, 389, 633, 710
SsiI CCGC 2 cut(s) 179, 670
SspMI CTAG 3 cut(s) 306, 333, 485
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 2 cut(s) 253, 265
TasI AATT 7 cut(s) 41, 60, 87, 343, 389, 633, 710
Tru1I TTAA 2 cut(s) 128, 453
Tru9I TTAA 2 cut(s) 128, 453
TseFI GTSAC 3 cut(s) 276, 414, 628
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 3 cut(s) 276, 414, 628
TspDTI ATGAA 5 cut(s) 70, 164, 173, 183, 626
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 4 cut(s) 41, 60, 87, 389
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 3 cut(s) 306, 333, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.