Rh5DG385400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018810
Physical Location & Seq
Reverse (-)
59336884 .. 59376088
39205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG385400.1

Sequence Viewer

Length: 543 bp
ATGCATGCAGCTGAGCAATTTCACTCTCTACTTGATTATGCTGATCGCATTTATAGGCTTTTTGCAGCAATGTTCAATGTCAAATATCTGAAAGTTTCAGGATATCCAGACATTGTATACCTATATCGTCTGCCTACATCTCATAATTTGAACCACTTGGAGATGCATCTTCAAAGTTGCTGCTATTTTCAGTTACTGACAAATTTCCTCAATGTATCGTCCAATCTGGAATCTCCTATATTTGAAAATAACATTCAATGTAGAAGTGTTATTCATGACAAATGTGACTTGGTCCATGAATGGTGTCCACCGGAATCTGTGCATATATGTTTGTTGTCATGCCTCAAGAGAATTTGCATACGGGGATTTGAAGGAGGGCCAGATAAGATGGAAGTAGCAGAGTACTTAATGAAGCACGGAGTTCTTTTGAGTAAGAAATTGAATGTACTGTACTGTAAGCTCCATGGTCTTCACTTCCAGAACTCACTTGTGATTGGACAAAAAGACTTGAAAGAACTTCATTGGGCATTCACAAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

180

Amino Acids

21.02

Weight (kDa)

7.17

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 104 - 145 1.3e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AcsI RAATTY 3 cut(s) 202, 351, 535
AfaI GTAC 3 cut(s) 404, 447, 452
AgsI TTSAA 8 cut(s) 76, 151, 173, 245, 257, 371, 442, 511
AluBI AGCT 2 cut(s) 11, 460
AluI AGCT 2 cut(s) 11, 460
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 8, 65, 180
ApoI RAATTY 3 cut(s) 202, 351, 535
AspS9I GGNCC 2 cut(s) 292, 377
AvaII GGWCC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 3 cut(s) 20, 77, 167
BccI CCATC 1 cut(s) 382
BfaI CTAG 1 cut(s) 541
BisI GCNGC 3 cut(s) 9, 66, 181
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 10, 67, 182
BmcAI AGTACT 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 292, 377
BmsI GCATC 2 cut(s) 153, 175
BpiI GAAGAC 1 cut(s) 461
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 20, 77, 167
BshFI GGCC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 43
Bsp1720I GCTNAGC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 463
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 1 cut(s) 43
BssNAI GTATAC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 463
Bst1107I GTATAC 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 450, 455
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 463
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 20, 77, 167
BstV2I GAAGAC 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 196
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 292, 377
Csp6I GTAC 3 cut(s) 403, 446, 451
CviAII CATG 5 cut(s) 5, 275, 296, 339, 464
CviJI RGCY 4 cut(s) 11, 58, 379, 460
CviKI_1 RGCY 4 cut(s) 11, 58, 379, 460
CviQI GTAC 3 cut(s) 403, 446, 451
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 463
Eco32I GATATC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 292
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 2 cut(s) 6, 168
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 5 cut(s) 8, 278, 299, 342, 467
FatI CATG 5 cut(s) 4, 274, 295, 338, 463
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 9, 66, 181
Fsp4HI GCNGC 3 cut(s) 9, 66, 181
FspBI CTAG 1 cut(s) 541
GluI GCNGC 3 cut(s) 9, 66, 181
HaeIII GGCC 1 cut(s) 379
HapII CCGG 1 cut(s) 311
Hin1II CATG 5 cut(s) 8, 278, 299, 342, 467
HinfI GANTC 2 cut(s) 230, 314
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 118, 308
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 6 cut(s) 99, 107, 227, 275, 346, 478
Hpy8I GTNNAC 2 cut(s) 118, 308
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 450, 455
HpyCH4V TGCA 6 cut(s) 4, 8, 65, 166, 322, 357
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 5 cut(s) 8, 278, 299, 342, 467
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 465
LpnPI CCDG 6 cut(s) 84, 120, 212, 324, 393, 491
Lsp1109I GCAGC 3 cut(s) 20, 77, 167
LweI GCATC 2 cut(s) 153, 175
MaeI CTAG 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 192, 284
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 161, 461
MluCI AATT 6 cut(s) 17, 145, 202, 351, 437, 535
MnlI CCTC 3 cut(s) 218, 353, 368
Mph1103I ATGCAT 2 cut(s) 6, 168
MseI TTAA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 527
NcoI CCATGG 1 cut(s) 463
NdeII GATC 1 cut(s) 43
NlaIII CATG 5 cut(s) 8, 278, 299, 342, 467
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 2 cut(s) 6, 168
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 230, 314
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 10, 67, 182
PspPI GGNCC 2 cut(s) 292, 377
PstNI CAGNNNCTG 1 cut(s) 196
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 404, 447, 452
RsaNI GTAC 3 cut(s) 403, 446, 451
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 3 cut(s) 9, 66, 181
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 2 cut(s) 292, 377
ScaI AGTACT 1 cut(s) 404
SetI ASST 3 cut(s) 13, 123, 462
SfaNI GCATC 2 cut(s) 153, 175
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 8
Sse9I AATT 6 cut(s) 17, 145, 202, 351, 437, 535
SspMI CTAG 1 cut(s) 541
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 450, 455
TasI AATT 6 cut(s) 17, 145, 202, 351, 437, 535
TatI WGTACW 3 cut(s) 402, 445, 450
TfiI GAWTC 2 cut(s) 230, 314
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 8, 65, 180
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 263, 312, 425, 509
TspGWI ACGGA 1 cut(s) 432
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 3 cut(s) 202, 351, 535
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 541
ZrmI AGTACT 1 cut(s) 404
Zsp2I ATGCAT 2 cut(s) 6, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.