Rh5CG393800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018810
Physical Location & Seq
Reverse (-)
51858774 .. 51859797
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG393800.1

Sequence Viewer

Length: 570 bp
ATGCATGCAGCTGAGCAATTTCACTCTCTACTTGATTATGCTGATCGCATTCATAGGCTTTTTGCAGCAATGTTCAATGTCAAATATCTGAAAGTTTCAGGGCCCTATATTGGGGATCCAGACATTGTATACCTATATCGTCTGCCTACATCTCACAATTTGAACCACTTGGAGATACATCTTCAAAGTTGCTGCTATTTTCAGTTACTGACAAATTTCCTCAATGTATTGTCCAATCTGGAATCTCCTATATTTGAAAATAACATTCAATGTAGAAGTGTTATTCATGACAAATGTGACTTGGTCCATGAATGGTGTCCACCGGAATCTGTGCATATATGTTTGTTGTCATGCCTCAAGAGAATTTGCATACGGGGATTTGAAGGGCCAGATAAGATGGAAGTAGCAGAGTACTTATTGAAGCACGGAGTTCTTTTGAGTAAGGTGACAATCTATACTTGTAGTTTCCTTAAAGAATTTGTGACAAAGTTCTTCCTTAAATTTTCAAATTTCCTAAGAGGTTCAAGGACTTGTCACATTGAATGGATACTGGGGACGACCAACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

189

Amino Acids

22.03

Weight (kDa)

6.82

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 108 - 151 4.4e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AclWI GGATC 2 cut(s) 110, 123
AcsI RAATTY 5 cut(s) 214, 363, 476, 500, 508
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 110, 111
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 2 cut(s) 110, 123
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 2 cut(s) 101, 386
ApaI GGGCCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 8, 65, 192
ApoI RAATTY 5 cut(s) 214, 363, 476, 500, 508
AspS9I GGNCC 4 cut(s) 101, 102, 304, 386
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 105
BamHI GGATCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 20, 77, 179
BccI CCATC 1 cut(s) 391
BciVI GTATCC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 3 cut(s) 9, 66, 193
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 10, 67, 194
BmcAI AGTACT 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 101, 102, 304, 386
BmiI GGNNCC 2 cut(s) 103, 117
BmrI ACTGGG 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 111
Bse1I ACTGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 110, 111
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 3 cut(s) 20, 77, 179
BshFI GGCC 2 cut(s) 103, 388
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 110, 111
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 2 cut(s) 103, 388
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 43, 115
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 2 cut(s) 103, 388
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 103, 117
BspPI GGATC 2 cut(s) 110, 123
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 555
BssMI GATC 2 cut(s) 43, 115
BssNAI GTATAC 1 cut(s) 130
Bst1107I GTATAC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 12, 515
BstKTI GATC 2 cut(s) 46, 118
BstMBI GATC 2 cut(s) 43, 115
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 20, 77, 179
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BstZ17I GTATAC 1 cut(s) 130
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 2 cut(s) 103, 388
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 4 cut(s) 101, 102, 304, 386
Csp6I GTAC 1 cut(s) 412
CviAII CATG 4 cut(s) 5, 287, 308, 351
CviJI RGCY 4 cut(s) 11, 58, 103, 388
CviKI_1 RGCY 4 cut(s) 11, 58, 103, 388
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 12, 515
DpnI GATC 2 cut(s) 45, 117
DpnII GATC 2 cut(s) 43, 115
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 304
EcoO109I RGGNCCY 2 cut(s) 101, 102
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 4 cut(s) 8, 290, 311, 354
FatI CATG 4 cut(s) 4, 286, 307, 350
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 9, 66, 193
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 9, 66, 193
GluI GCNGC 3 cut(s) 9, 66, 193
HaeIII GGCC 2 cut(s) 103, 388
HapII CCGG 1 cut(s) 323
Hin1II CATG 4 cut(s) 8, 290, 311, 354
HinfI GANTC 2 cut(s) 242, 326
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 2 cut(s) 130, 320
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 4 cut(s) 119, 239, 287, 358
Hpy8I GTNNAC 2 cut(s) 130, 320
HpyAV CCTTC 1 cut(s) 377
HpyCH4V TGCA 5 cut(s) 4, 8, 65, 334, 369
HpyF3I CTNAG 2 cut(s) 12, 515
Hsp92II CATG 4 cut(s) 8, 290, 311, 354
Kzo9I GATC 2 cut(s) 43, 115
LpnPI CCDG 6 cut(s) 84, 132, 224, 336, 402, 536
Lsp1109I GCAGC 3 cut(s) 20, 77, 179
MaeIII GTNAC 5 cut(s) 204, 296, 445, 481, 533
MalI GATC 2 cut(s) 45, 117
MboI GATC 2 cut(s) 43, 115
MboII GAAGA 2 cut(s) 173, 484
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 7 cut(s) 17, 157, 214, 363, 476, 500, 508
MnlI CCTC 3 cut(s) 230, 365, 512
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 471, 498
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 48
NdeII GATC 2 cut(s) 43, 115
NlaIII CATG 4 cut(s) 8, 290, 311, 354
NlaIV GGNNCC 2 cut(s) 103, 117
NmuCI GTSAC 4 cut(s) 296, 445, 481, 533
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 242, 326
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 10, 67, 194
PspN4I GGNNCC 2 cut(s) 103, 117
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 4 cut(s) 101, 102, 304, 386
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 471, 498
SatI GCNGC 3 cut(s) 9, 66, 193
Sau3AI GATC 2 cut(s) 43, 115
Sau96I GGNCC 4 cut(s) 101, 102, 304, 386
ScaI AGTACT 1 cut(s) 413
SduI GDGCHC 1 cut(s) 105
SetI ASST 4 cut(s) 13, 135, 447, 523
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 17, 157, 214, 363, 476, 500, 508
TasI AATT 7 cut(s) 17, 157, 214, 363, 476, 500, 508
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 2 cut(s) 242, 326
Tru1I TTAA 2 cut(s) 471, 498
Tru9I TTAA 2 cut(s) 471, 498
TseFI GTSAC 4 cut(s) 296, 445, 481, 533
TseI GCWGC 3 cut(s) 8, 65, 192
Tsp45I GTSAC 4 cut(s) 296, 445, 481, 533
TspDTI ATGAA 3 cut(s) 41, 275, 324
TspGWI ACGGA 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 5 cut(s) 214, 363, 476, 500, 508
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.