Rh5BG371600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018810
Physical Location & Seq
Reverse (-)
58364797 .. 58365600
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG371600.1

Sequence Viewer

Length: 573 bp
ATGCATGCAGCTGAGCAATTTCACTCTCTACTTGATTATGCTGATCGCATTCATAGGCTTTTTGCAGCAATGTTCAATGTCAAATATCTGAAAGTTTCAGGTCCCTATATTGGGGATCCAGACATTGTATACCTCTATCGTCTGCCTACATCTCATAATTTGAACCACTTGGAGATACATCTTCAAAGTTGCTGCTATTTTCAGTTACTGACAAATTTCCTCAATGTATCGTCCAATCTGGAATCTCCTATATTTGAAAATAACATTCAATGTAGAGGTGTTATTCATGACAAATGTGACTTGGTCCATGAATGGTGTCCACCGGAATCTGTGCATATATGTTTGTTGTCATGCCTCGAGAGAATTTGCATACGGGGATTTGAAGGAGGGCCAGATAAGATGGAAGTAGCAGAGTACTTATTGAAGCACGGAGTTCTTTTGAGTAAGGTGACAATCTATACTTGTAGTTTCCTTAAAGAATTTGTGACAGAGTTCTTCCTTAAATTTTCAAATTTCCTAAGAGGTTCAAAGACTTGCCACATTGAATGGATACTGGGGACGACCAACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

190

Amino Acids

22.01

Weight (kDa)

6.1

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 108 - 152 6.2e-11 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AclWI GGATC 2 cut(s) 110, 123
AcsI RAATTY 5 cut(s) 214, 363, 479, 503, 511
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 2 cut(s) 110, 111
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 2 cut(s) 110, 123
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 8, 65, 192
ApoI RAATTY 5 cut(s) 214, 363, 479, 503, 511
AspS9I GGNCC 3 cut(s) 101, 304, 389
AsuHPI GGTGA 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 2 cut(s) 101, 304
BamHI GGATCC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 20, 77, 179
BccI CCATC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 543
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 3 cut(s) 9, 66, 193
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 10, 67, 194
BmcAI AGTACT 1 cut(s) 416
Bme18I GGWCC 2 cut(s) 101, 304
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 3 cut(s) 101, 304, 389
BmiI GGNNCC 2 cut(s) 103, 117
BmrI ACTGGG 1 cut(s) 563
BmuI ACTGGG 1 cut(s) 563
Bpu1102I GCTNAGC 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 111
Bse1I ACTGG 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 110, 111
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 558
BseXI GCAGC 3 cut(s) 20, 77, 179
BshFI GGCC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 110, 111
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 356
Bsp143I GATC 2 cut(s) 43, 115
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 103, 117
BspPI GGATC 2 cut(s) 110, 123
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 558
BssMI GATC 2 cut(s) 43, 115
BssNAI GTATAC 1 cut(s) 130
Bst1107I GTATAC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 12, 518
BstKTI GATC 2 cut(s) 46, 118
BstMBI GATC 2 cut(s) 43, 115
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 3 cut(s) 20, 77, 179
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BstZ17I GTATAC 1 cut(s) 130
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 101, 304, 389
Csp6I GTAC 1 cut(s) 415
CviAII CATG 4 cut(s) 5, 287, 308, 351
CviJI RGCY 3 cut(s) 11, 58, 391
CviKI_1 RGCY 3 cut(s) 11, 58, 391
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 12, 518
DpnI GATC 2 cut(s) 45, 117
DpnII GATC 2 cut(s) 43, 115
Eco47I GGWCC 2 cut(s) 101, 304
Eco88I CYCGRG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 290, 311, 354
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 4, 286, 307, 350
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 9, 66, 193
Fsp4HI GCNGC 3 cut(s) 9, 66, 193
GluI GCNGC 3 cut(s) 9, 66, 193
HaeIII GGCC 1 cut(s) 391
HapII CCGG 1 cut(s) 323
Hin1II CATG 4 cut(s) 8, 290, 311, 354
HinfI GANTC 2 cut(s) 242, 326
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 130, 320
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 4 cut(s) 119, 239, 287, 358
Hpy8I GTNNAC 2 cut(s) 130, 320
HpyAV CCTTC 1 cut(s) 377
HpyCH4V TGCA 5 cut(s) 4, 8, 65, 334, 369
HpyF3I CTNAG 2 cut(s) 12, 518
Hsp92II CATG 4 cut(s) 8, 290, 311, 354
Kzo9I GATC 2 cut(s) 43, 115
LpnPI CCDG 6 cut(s) 84, 132, 224, 336, 405, 539
Lsp1109I GCAGC 3 cut(s) 20, 77, 179
MaeIII GTNAC 4 cut(s) 204, 296, 448, 484
MalI GATC 2 cut(s) 45, 117
MboI GATC 2 cut(s) 43, 115
MboII GAAGA 2 cut(s) 173, 487
MflI RGATCY 1 cut(s) 115
MluCI AATT 7 cut(s) 17, 157, 214, 363, 479, 503, 511
MnlI CCTC 6 cut(s) 143, 230, 269, 365, 380, 515
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 474, 501
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 48
NdeII GATC 2 cut(s) 43, 115
NlaIII CATG 4 cut(s) 8, 290, 311, 354
NlaIV GGNNCC 2 cut(s) 103, 117
NmuCI GTSAC 3 cut(s) 296, 448, 484
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 242, 326
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 10, 67, 194
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 103, 117
PspPI GGNCC 3 cut(s) 101, 304, 389
PspPPI RGGWCCY 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SaqAI TTAA 2 cut(s) 474, 501
SatI GCNGC 3 cut(s) 9, 66, 193
Sau3AI GATC 2 cut(s) 43, 115
Sau96I GGNCC 3 cut(s) 101, 304, 389
ScaI AGTACT 1 cut(s) 416
SetI ASST 6 cut(s) 13, 103, 135, 280, 450, 526
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 2 cut(s) 101, 304
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 17, 157, 214, 363, 479, 503, 511
TaqI TCGA 1 cut(s) 357
TasI AATT 7 cut(s) 17, 157, 214, 363, 479, 503, 511
TatI WGTACW 1 cut(s) 414
TfiI GAWTC 2 cut(s) 242, 326
Tru1I TTAA 2 cut(s) 474, 501
Tru9I TTAA 2 cut(s) 474, 501
TseFI GTSAC 3 cut(s) 296, 448, 484
TseI GCWGC 3 cut(s) 8, 65, 192
Tsp45I GTSAC 3 cut(s) 296, 448, 484
TspDTI ATGAA 3 cut(s) 41, 275, 324
TspGWI ACGGA 1 cut(s) 444
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 101, 304
XapI RAATTY 5 cut(s) 214, 363, 479, 503, 511
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.