Rh5AG360600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018810
Physical Location & Seq
Reverse (-)
60635741 .. 60636421
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG360600.1

Sequence Viewer

Length: 372 bp
ATGCATGCAGCTGAGCAATTTCACTCTCTACTTGATTATGCTGATCGCATTCATAGGCTTTTTGCAGCAATGTTCAATGTCAAATATCTGAAAGTTTCAGGTCCCTATATTGGGGATCCAGACATTTTACTGACAAATTTCCTCAATGTATCGTCCAATCTGGAATCTCCTATATTTGAAAATAACATTCAATGTAGAAGTGTTATTCATGACAAATGTGACTTGGTCCATGAATGGTGTCCACCGGAATCTGTGCATATATGTTTGTTGTCATGCCTCAAGAGAATTTGCATACGGGGATTTGAAGGAGGGCCAGATAAGATGGAAGTAGCAGAGTACTTATTGAAGCACGTACGGAGTTCTTTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

5.94

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 82 - 117 7.4e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 110, 123
AcsI RAATTY 2 cut(s) 136, 285
AfaI GTAC 2 cut(s) 338, 354
AfiI CCNNNNNNNGG 2 cut(s) 110, 111
AgsI TTSAA 5 cut(s) 76, 179, 191, 305, 346
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 2 cut(s) 110, 123
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 8, 65
ApoI RAATTY 2 cut(s) 136, 285
AspS9I GGNCC 3 cut(s) 101, 226, 311
AvaII GGWCC 2 cut(s) 101, 226
BamHI GGATCC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 20, 77
BccI CCATC 1 cut(s) 316
BisI GCNGC 2 cut(s) 9, 66
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 2 cut(s) 10, 67
BmcAI AGTACT 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 101, 226
BmgT120I GGNCC 3 cut(s) 101, 226, 311
BmiI GGNNCC 2 cut(s) 103, 117
Bpu1102I GCTNAGC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 111
Bse3DI GCAATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 110, 111
BseMI GCAATG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 20, 77
BshFI GGCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 245
BsiWI CGTACG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 110, 111
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 43, 115
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 103, 117
BspPI GGATC 2 cut(s) 110, 123
BsrDI GCAATG 1 cut(s) 75
BssMI GATC 2 cut(s) 43, 115
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 2 cut(s) 46, 118
BstMBI GATC 2 cut(s) 43, 115
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 20, 77
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 101, 226, 311
Csp6I GTAC 2 cut(s) 337, 353
CviAII CATG 4 cut(s) 5, 209, 230, 273
CviJI RGCY 3 cut(s) 11, 58, 313
CviKI_1 RGCY 3 cut(s) 11, 58, 313
CviQI GTAC 2 cut(s) 337, 353
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 45, 117
DpnII GATC 2 cut(s) 43, 115
Eco47I GGWCC 2 cut(s) 101, 226
EcoO109I RGGNCCY 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 212, 233, 276
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 4, 208, 229, 272
Fnu4HI GCNGC 2 cut(s) 9, 66
Fsp4HI GCNGC 2 cut(s) 9, 66
GluI GCNGC 2 cut(s) 9, 66
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 245
Hin1II CATG 4 cut(s) 8, 212, 233, 276
HinfI GANTC 2 cut(s) 164, 248
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 4 cut(s) 119, 161, 209, 280
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 4, 8, 65, 256, 291
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 4 cut(s) 8, 212, 233, 276
Kzo9I GATC 2 cut(s) 43, 115
LpnPI CCDG 5 cut(s) 84, 132, 146, 258, 327
Lsp1109I GCAGC 2 cut(s) 20, 77
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 45, 117
MboI GATC 2 cut(s) 43, 115
MflI RGATCY 1 cut(s) 115
MluCI AATT 3 cut(s) 17, 136, 285
MnlI CCTC 3 cut(s) 152, 287, 302
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 48
NdeII GATC 2 cut(s) 43, 115
NlaIII CATG 4 cut(s) 8, 212, 233, 276
NlaIV GGNNCC 2 cut(s) 103, 117
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 1 cut(s) 208
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 164, 248
Pfl23II CGTACG 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 10, 67
Ppu21I YACGTR 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
PspLI CGTACG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 103, 117
PspPI GGNCC 3 cut(s) 101, 226, 311
PspPPI RGGWCCY 1 cut(s) 101
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 338, 354
RsaNI GTAC 2 cut(s) 337, 353
SatI GCNGC 2 cut(s) 9, 66
Sau3AI GATC 2 cut(s) 43, 115
Sau96I GGNCC 3 cut(s) 101, 226, 311
ScaI AGTACT 1 cut(s) 338
SetI ASST 3 cut(s) 13, 103, 354
SinI GGWCC 2 cut(s) 101, 226
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 17, 136, 285
TaiI ACGT 1 cut(s) 354
TasI AATT 3 cut(s) 17, 136, 285
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 164, 248
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 2 cut(s) 8, 65
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 41, 197, 246
TspGWI ACGGA 1 cut(s) 370
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 101, 226
XapI RAATTY 2 cut(s) 136, 285
XceI RCATGY 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.