Rmu_sc0004404.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004404.1
OG0018810
Physical Location & Seq
Reverse (-)
2582 .. 3164
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004404.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atgcctacgttcaataatttgaaccagttggagctacgtcttcaaacttgctgctcttggcaatcactgccaatttttctcaatgcgtcacccaatctggaatatcttctgttggagaataacatcaattgccgtgctcatggcgctcatatagacgatcctgataaatatgattatgattctgacaattctgacaattatgatgaagatgacttggtacatgaatggtttcctcccgaggttgttcctatttgtttgttgtcatgcctaaagactattcacatacggggatttcgaggacgtatcgatgagatggaagtcgcagggtacttgttgaagcacgggaaggttttgaacaaggtgacaattcatacttctaatttctgtcaagaatcagtaatggagttgtggcagatattttcaaggctccctaggggttcaaagactagtgaaattgaatggatccttccaaagttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

159

Amino Acids

18.49

Weight (kDa)

5.02

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018810)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02890 FvH4_3g02890
rosa_multiflora Rmu_sc0004404.1_g000001
rosa_samantha Rh3DG092100 Rh5AG360600 Rh5BG371600 Rh5CG393800 Rh5DG385300 Rh5DG385400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 152, 457, 470
AfaI GTAC 2 cut(s) 219, 329
AgsI TTSAA 8 cut(s) 13, 22, 44, 337, 355, 423, 441, 458
AhlI ACTAGT 1 cut(s) 446
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 3 cut(s) 152, 457, 470
Ama87I CYCGRG 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 51
Asp700I GAANNNNTTC 2 cut(s) 105, 228
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 81, 373
AvaI CYCGRG 1 cut(s) 236
AvrII CCTAGG 1 cut(s) 431
BamHI GGATCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 117
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 432, 447
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 1 cut(s) 52
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 428, 464
BpiI GAAGAC 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 237, 431
Bse1I ACTGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 237, 431
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 157, 462
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 428, 464
BspPI GGATC 3 cut(s) 152, 457, 470
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 237, 431
BssMI GATC 2 cut(s) 157, 462
BssT1I CCWWGG 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 160, 465
BstMBI GATC 2 cut(s) 157, 462
BstMWI GCNNNNNNNGC 2 cut(s) 67, 143
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 218, 328
CviAII CATG 3 cut(s) 140, 221, 264
CviJI RGCY 2 cut(s) 34, 427
CviKI_1 RGCY 2 cut(s) 34, 427
CviQI GTAC 2 cut(s) 218, 328
DpnI GATC 2 cut(s) 159, 464
DpnII GATC 2 cut(s) 157, 462
Eco130I CCWWGG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 3 cut(s) 143, 224, 267
FatI CATG 3 cut(s) 139, 220, 263
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 2 cut(s) 432, 447
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 147
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 143, 224, 267
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 2 cut(s) 179, 392
HphI GGTGA 2 cut(s) 81, 373
Hpy188I TCNGA 2 cut(s) 184, 193
Hpy188III TCNNGA 4 cut(s) 98, 161, 236, 389
HpyAV CCTTC 2 cut(s) 340, 476
HpyCH4IV ACGT 3 cut(s) 8, 37, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 143
HpySE526I ACGT 3 cut(s) 8, 37, 301
Hsp92II CATG 3 cut(s) 143, 224, 267
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 157, 462
LmnI GCTCC 2 cut(s) 31, 432
LpnPI CCDG 4 cut(s) 38, 83, 174, 309
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 2 cut(s) 432, 447
MaeII ACGT 3 cut(s) 8, 37, 301
MaeIII GTNAC 2 cut(s) 87, 361
MalI GATC 2 cut(s) 159, 464
MboI GATC 2 cut(s) 157, 462
MboII GAAGA 3 cut(s) 32, 98, 218
MfeI CAATTG 1 cut(s) 127
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 8 cut(s) 16, 72, 127, 187, 196, 366, 379, 453
MmeI TCCRAC 2 cut(s) 9, 93
MnlI CCTC 3 cut(s) 232, 243, 290
MroXI GAANNNNTTC 2 cut(s) 105, 228
MunI CAATTG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 67, 143
NdeII GATC 2 cut(s) 157, 462
NlaIII CATG 3 cut(s) 143, 224, 267
NlaIV GGNNCC 2 cut(s) 428, 464
NmuCI GTSAC 2 cut(s) 87, 361
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 105, 228
PfeI GAWTC 2 cut(s) 179, 392
PkrI GCNGC 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 428, 464
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 2 cut(s) 219, 329
RsaNI GTAC 2 cut(s) 218, 328
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 2 cut(s) 157, 462
SduI GDGCHC 1 cut(s) 139
SetI ASST 7 cut(s) 11, 36, 40, 243, 304, 351, 363
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 8 cut(s) 16, 72, 127, 187, 196, 366, 379, 453
SspMI CTAG 2 cut(s) 432, 447
StyI CCWWGG 1 cut(s) 431
TaiI ACGT 3 cut(s) 11, 40, 304
TaqI TCGA 2 cut(s) 295, 306
TasI AATT 8 cut(s) 16, 72, 127, 187, 196, 366, 379, 453
TfiI GAWTC 2 cut(s) 179, 392
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 87, 361
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 2 cut(s) 87, 361
TspDTI ATGAA 3 cut(s) 219, 237, 359
TspRI CASTG 1 cut(s) 72
XmaJI CCTAGG 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 105, 228
XspI CTAG 2 cut(s) 432, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.