FvH4_3g04730

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017617
Physical Location & Seq
Reverse (-)
2701793 .. 2703761
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04730.t1

Sequence Viewer

Length: 897 bp
ATGGGATTGAGTACTAAGCAGGTTAGTAGTGATGGCTTGGACTGGAGCCAGACCTTGCAGCTGCAAGCACAAAGCTTTGAGCTGCCAAAACCGCCTGTGGCGAGGCGGCAACAGCAACAAAACCAGGAGCAACCGGAGCAGTTGAAGTGTCCGAGGTGTGAATCAACAAACACAAAGTTCTGTTACTACAACAACTACAACAAGACTCAGCCTAGGCACTTCTGCAGAGCTTGCAAGAGGCACTGGACCAAAGGCGGAACGCTTCGAAACGTTCCTGTTGGTGGCCATGGCCGGAAAAACAAGCGCACCAGGAAACCAAACTCTAGTGCCTCCGCCGCAAAAACCACCACAAACGGTGCTGGTACTATTTCCACCACGACTAGGGTGATCAACAATACCAACTTGGCATTTGATCGAACGGATGGTGCTCAGAGGCTTAACAGTCACTTGGCAATTGATGGAGAGCAAAGGCTCAACACACATATGGGAGTTCTTCTTCCTCAACAGAGTTTAATCACCTCAAGTGAATTGGACAACCATATATATTCATCGTCCTCAGGTTTAAGTAGTACTACTATGCCTTTTAATTTTCTTCAAGCTGGTAGAGCCCAAGTACTTAGCTTTCCCTTCTCAAGCTCAAGTACTACTTCAAGTTCCTTTGACACAATCTCTACCTCTTTTCAATCCCCAAATGTTTGTAACTACCCTCAAGATCAATTCATCAAATCCATGGAGGAGCCAACCATCACAAGCATCATGCCCTCAACAACCATCCCGCAGGCTAATAATCCAAGCGTCGGCATGTACACATCAAACGACTGGAATTGGGACGACATTGAAACCTTGGTTTCTACTGATCTCAATGTGGCTTGGGATGATTCTGATATGAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

299

Amino Acids

33.1

Weight (kDa)

8.51

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 47 - 102 3.7e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 6 cut(s) 92, 106, 255, 333, 336, 776
AclI AACGTT 1 cut(s) 270
AcoI YGGCCR 2 cut(s) 283, 289
AfaI GTAC 6 cut(s) 13, 364, 571, 615, 643, 806
AfiI CCNNNNNNNGG 3 cut(s) 281, 381, 797
AgsI TTSAA 5 cut(s) 145, 596, 651, 683, 839
AjnI CCWGG 2 cut(s) 123, 308
AluBI AGCT 7 cut(s) 61, 75, 82, 230, 599, 621, 636
AluI AGCT 7 cut(s) 61, 75, 82, 230, 599, 621, 636
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 2 cut(s) 283, 289
ApeKI GCWGC 3 cut(s) 58, 61, 82
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 397, 508
AsuII TTCGAA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 246
AvrII CCTAGG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 556
BalI TGGCCA 1 cut(s) 285
BanII GRGCYC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 3 cut(s) 48, 69, 70
BccI CCATC 5 cut(s) 26, 416, 452, 752, 779
BciT130I CCWGG 2 cut(s) 125, 310
BclI TGATCA 1 cut(s) 387
BfaI CTAG 3 cut(s) 213, 324, 381
BfmI CTRYAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 5 cut(s) 59, 62, 83, 107, 336
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 5 cut(s) 60, 63, 84, 108, 337
BmcAI AGTACT 4 cut(s) 13, 571, 615, 643
Bme1390I CCNGG 2 cut(s) 125, 310
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 47, 738
BmrFI CCNGG 2 cut(s) 125, 310
BmsI GCATC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 64
Bpu14I TTCGAA 1 cut(s) 265
BpuEI CTTGAG 4 cut(s) 505, 616, 622, 693
BsaJI CCNNGG 5 cut(s) 152, 212, 286, 729, 843
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 381, 797
Bse1I ACTGG 3 cut(s) 47, 248, 824
Bse21I CCTNAGG 1 cut(s) 556
BseBI CCWGG 2 cut(s) 125, 310
BseDI CCNNGG 5 cut(s) 152, 212, 286, 729, 843
BseGI GGATG 3 cut(s) 427, 771, 880
BseLI CCNNNNNNNGG 3 cut(s) 281, 381, 797
BseMII CTCAG 3 cut(s) 221, 443, 570
BseNI ACTGG 3 cut(s) 47, 248, 824
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 3 cut(s) 48, 69, 70
BshFI GGCC 2 cut(s) 285, 291
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 2 cut(s) 134, 292
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 3 cut(s) 281, 381, 797
BsmFI GGGAC 1 cut(s) 842
BsnI GGCC 2 cut(s) 285, 291
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 430, 610
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 4 cut(s) 387, 412, 712, 856
Bsp19I CCATGG 2 cut(s) 286, 729
BspACI CCGC 6 cut(s) 92, 106, 255, 333, 336, 776
BspANI GGCC 2 cut(s) 285, 291
BspCNI CTCAG 3 cut(s) 220, 442, 569
BspLI GGNNCC 2 cut(s) 47, 738
BspMAI CTGCAG 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 10
BspT104I TTCGAA 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 3 cut(s) 47, 248, 824
BssECI CCNNGG 5 cut(s) 152, 212, 286, 729, 843
BssMI GATC 4 cut(s) 387, 412, 712, 856
BssT1I CCWWGG 4 cut(s) 212, 286, 729, 843
Bst2UI CCWGG 2 cut(s) 125, 310
Bst4CI ACNGT 2 cut(s) 356, 443
BstAPI GCANNNNNTGC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 804
BstBI TTCGAA 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 66, 232, 780
BstDEI CTNAG 5 cut(s) 15, 207, 429, 556, 617
BstDSI CCRYGG 2 cut(s) 286, 729
BstF5I GGATG 3 cut(s) 427, 771, 880
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 4 cut(s) 390, 415, 715, 859
BstMBI GATC 4 cut(s) 387, 412, 712, 856
BstMWI GCNNNNNNNGC 6 cut(s) 91, 112, 136, 231, 335, 605
BstNI CCWGG 2 cut(s) 125, 310
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 2 cut(s) 123, 308
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 3 cut(s) 48, 69, 70
Bsu36I CCTNAGG 1 cut(s) 556
BsuRI GGCC 2 cut(s) 285, 291
BtgI CCRYGG 2 cut(s) 286, 729
BtsCI GGATG 3 cut(s) 427, 771, 880
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 3 cut(s) 66, 232, 780
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 784
Csp6I GTAC 6 cut(s) 12, 363, 570, 614, 642, 805
CviAII CATG 4 cut(s) 287, 730, 757, 802
CviQI GTAC 6 cut(s) 12, 363, 570, 614, 642, 805
DdeI CTNAG 5 cut(s) 15, 207, 429, 556, 617
DpnI GATC 4 cut(s) 389, 414, 714, 858
DpnII GATC 4 cut(s) 387, 412, 712, 856
EaeI YGGCCR 2 cut(s) 283, 289
EciI GGCGGA 2 cut(s) 270, 322
Eco130I CCWWGG 4 cut(s) 212, 286, 729, 843
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 123, 308
EcoT14I CCWWGG 4 cut(s) 212, 286, 729, 843
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 4 cut(s) 212, 286, 729, 843
FaeI CATG 4 cut(s) 290, 733, 760, 805
FalI AAGNNNNNCTT 2 cut(s) 631, 663
FaqI GGGAC 1 cut(s) 842
FatI CATG 4 cut(s) 286, 729, 756, 801
FauI CCCGC 1 cut(s) 783
FauNDI CATATG 1 cut(s) 483
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 5 cut(s) 59, 62, 83, 107, 336
FokI GGATG 3 cut(s) 434, 758, 887
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 5 cut(s) 59, 62, 83, 107, 336
FspBI CTAG 3 cut(s) 213, 324, 381
GlaI GCGC 1 cut(s) 305
GluI GCNGC 5 cut(s) 59, 62, 83, 107, 336
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 2 cut(s) 285, 291
HapII CCGG 2 cut(s) 134, 292
HgaI GACGC 1 cut(s) 784
HhaI GCGC 1 cut(s) 306
Hin1II CATG 4 cut(s) 290, 733, 760, 805
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 3 cut(s) 161, 205, 878
HpaII CCGG 2 cut(s) 134, 292
HphI GGTGA 2 cut(s) 397, 508
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 3 cut(s) 153, 432, 883
Hpy188III TCNNGA 1 cut(s) 710
Hpy8I GTNNAC 1 cut(s) 807
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 356, 443
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 58, 64, 225, 234
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 112, 136, 231, 335, 605
HpyF3I CTNAG 5 cut(s) 15, 207, 429, 556, 617
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 4 cut(s) 290, 733, 760, 805
HspAI GCGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 387, 412, 712, 856
LmnI GCTCC 4 cut(s) 45, 127, 136, 736
Lsp1109I GCAGC 3 cut(s) 48, 69, 70
LweI GCATC 1 cut(s) 762
MaeI CTAG 3 cut(s) 213, 324, 381
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 182, 443, 698
MalI GATC 4 cut(s) 389, 414, 714, 858
MboI GATC 4 cut(s) 387, 412, 712, 856
MboII GAAGA 3 cut(s) 485, 488, 584
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 2 cut(s) 430, 610
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 5 cut(s) 453, 527, 586, 716, 823
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 1 cut(s) 199
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
MseI TTAA 4 cut(s) 438, 512, 563, 585
MslI CAYNNNNRTG 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 2 cut(s) 134, 292
MspR9I CCNGG 2 cut(s) 125, 310
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 125, 310
MwoI GCNNNNNNNGC 6 cut(s) 91, 112, 136, 231, 335, 605
NcoI CCATGG 2 cut(s) 286, 729
NdeI CATATG 1 cut(s) 483
NdeII GATC 4 cut(s) 387, 412, 712, 856
NlaIII CATG 4 cut(s) 290, 733, 760, 805
NlaIV GGNNCC 2 cut(s) 47, 738
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 1 cut(s) 805
NspV TTCGAA 1 cut(s) 265
PfeI GAWTC 2 cut(s) 161, 878
PkrI GCNGC 5 cut(s) 60, 63, 84, 108, 337
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 123, 308
PspGI CCWGG 2 cut(s) 123, 308
PspN4I GGNNCC 2 cut(s) 47, 738
PspPI GGNCC 1 cut(s) 246
PstI CTGCAG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 6 cut(s) 13, 364, 571, 615, 643, 806
RsaNI GTAC 6 cut(s) 12, 363, 570, 614, 642, 805
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 4 cut(s) 438, 512, 563, 585
SatI GCNGC 5 cut(s) 59, 62, 83, 107, 336
Sau3AI GATC 4 cut(s) 387, 412, 712, 856
Sau96I GGNCC 1 cut(s) 246
ScaI AGTACT 4 cut(s) 13, 571, 615, 643
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 125, 310
SduI GDGCHC 2 cut(s) 430, 610
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 265
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 4 cut(s) 520, 631, 637, 708
SmoI CTYRAG 4 cut(s) 520, 631, 637, 708
Sse9I AATT 5 cut(s) 453, 527, 586, 716, 823
SsiI CCGC 6 cut(s) 92, 106, 255, 333, 336, 776
SspMI CTAG 3 cut(s) 213, 324, 381
StyD4I CCNGG 2 cut(s) 123, 308
StyI CCWWGG 4 cut(s) 212, 286, 729, 843
TaaI ACNGT 2 cut(s) 356, 443
TaiI ACGT 1 cut(s) 273
TaqI TCGA 2 cut(s) 265, 415
TasI AATT 5 cut(s) 453, 527, 586, 716, 823
TatI WGTACW 5 cut(s) 11, 569, 613, 641, 804
TauI GCSGC 2 cut(s) 109, 338
TfiI GAWTC 2 cut(s) 161, 878
Tru1I TTAA 4 cut(s) 438, 512, 563, 585
Tru9I TTAA 4 cut(s) 438, 512, 563, 585
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 58, 61, 82
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 537, 709
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 246
XceI RCATGY 1 cut(s) 805
XmaJI CCTAGG 1 cut(s) 212
XspI CTAG 3 cut(s) 213, 324, 381
ZrmI AGTACT 4 cut(s) 13, 571, 615, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.