MD10G1297900.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017617
Physical Location & Seq
Forward (+)
38515004 .. 38515882
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1297900.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGGATTGAGTACTAAGCAGGTCAACAGTGACGGGATGGATTGGAGTCAGACAAGCTTGCTGCAAGCTCAGACGTTTCAGCTGCCAAAACCACCAACCGCCATGAGGAGGCAGCAGCAACAAAATCAGCAGCAGCAATCCGAGCCGTTGAAGTGTCCGAGATGTGAATCAACGAACACAAAGTTTTGTTACTACAACAACTACAACAAGTCGCAGCCAAGGCACTTCTGCAGAGCTTGCAAGAGGCACTGGACAAAAGGTGGGACTCTCCGAAATGTCCCCGTTGGTGGCGTCCGCAAAAACAAGCGCCTCAAAAAGTCATCAAACACTTCTCCCGCGGAAGCAGCTGCCACAACCGCCGCAAACAGTGCAGGGATTGAGGATCATCACGAGAAAAAAACCGCGGCGCAAGCTCTCTATCACGCTCTTATCAGTCCCCAATCTTTGCTTCCGCAACAGAATTTGGACAACACAATCATATTTTCATCAGCAGGTTTAAGTAGCACCACTACTTTGCCTTTTCTTCATCAAAGTAGAAACCTGATAACCTTTGATCCCTTCTCAAGCTCAATTAGTACTACTACTTCAAGTTCCTTTGACACAAACTTCTCTTCAATCTCAACATCTTTGCAATCCTTAAACGTTTATAACTACGCTGGCGCCGAAGATCAGTTCAAAGCCACCGTAGAGGAGCCAACCATTACAAGCATCATGCCAAATATTCTTCCTCAGCAGCCCAATTGGAAAGCCCCTTCCACAAGTAACGCTGCCACGGACGTGTACTCGAACGACTGGAATTGGGAAGACATCGAAACCCTCGTTTCTACTGATCTCAACTTGCCTCATTGGGATGATTCTTCTGATCACATGAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

293

Amino Acids

32.52

Weight (kDa)

8.23

Isoelectric Point (pI)

66.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 49 - 102 1.1e-31 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc36I ACCTGC 2 cut(s) 10, 482
AccB1I GGYRCC 1 cut(s) 659
AccII CGCG 2 cut(s) 338, 404
AciI CCGC 9 cut(s) 99, 295, 336, 338, 357, 360, 402, 404, 452
AclI AACGTT 1 cut(s) 642
AclWI GGATC 2 cut(s) 390, 548
AcsI RAATTY 1 cut(s) 460
AcyI GRCGYC 2 cut(s) 291, 660
AfaI GTAC 3 cut(s) 13, 577, 782
AfiI CCNNNNNNNGG 3 cut(s) 105, 108, 287
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 4 cut(s) 151, 588, 615, 676
AjiI CACGTC 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 7 cut(s) 57, 68, 82, 236, 347, 413, 567
AluI AGCT 7 cut(s) 57, 68, 82, 236, 347, 413, 567
AlwI GGATC 2 cut(s) 390, 548
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 3 cut(s) 309, 409, 662
BanI GGYRCC 1 cut(s) 659
BarI GAAGNNNNNNTAC 2 cut(s) 568, 600
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 810
BbvCI CCTCAGC 1 cut(s) 729
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 862
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 2 cut(s) 310, 663
BfuAI ACCTGC 2 cut(s) 10, 482
BmcAI AGTACT 2 cut(s) 13, 577
BmgBI CACGTC 1 cut(s) 778
BmiI GGNNCC 2 cut(s) 661, 693
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 291, 660
BsaJI CCNNGG 4 cut(s) 218, 336, 402, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 108, 287
Bse1I ACTGG 2 cut(s) 254, 797
Bse8I GATNNNNATC 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 218, 336, 402, 771
BseGI GGATG 2 cut(s) 42, 856
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 105, 108, 287
BseMII CTCAG 2 cut(s) 83, 743
BseNI ACTGG 2 cut(s) 254, 797
BseRI GAGGAG 2 cut(s) 121, 704
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 338, 404
BshNI GGYRCC 1 cut(s) 659
BslFI GGGAC 3 cut(s) 263, 277, 420
BslI CCNNNNNNNGG 3 cut(s) 105, 108, 287
BsmFI GGGAC 3 cut(s) 263, 277, 420
Bsp143I GATC 5 cut(s) 382, 553, 667, 829, 862
BspACI CCGC 9 cut(s) 99, 295, 336, 338, 357, 360, 402, 404, 452
BspCNI CTCAG 2 cut(s) 82, 742
BspFNI CGCG 2 cut(s) 338, 404
BspLI GGNNCC 2 cut(s) 661, 693
BspMAI CTGCAG 1 cut(s) 233
BspMI ACCTGC 2 cut(s) 10, 482
BspPI GGATC 2 cut(s) 390, 548
BspT107I GGYRCC 1 cut(s) 659
BsrI ACTGG 2 cut(s) 254, 797
BssECI CCNNGG 4 cut(s) 218, 336, 402, 771
BssMI GATC 5 cut(s) 382, 553, 667, 829, 862
BssNI GRCGYC 2 cut(s) 291, 660
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 29, 368, 685, 876
Bst6I CTCTTC 1 cut(s) 616
BstACI GRCGYC 2 cut(s) 291, 660
BstAPI GCANNNNNTGC 2 cut(s) 237, 368
BstC8I GCNNGC 5 cut(s) 59, 66, 238, 411, 658
BstDEI CTNAG 3 cut(s) 15, 69, 729
BstDSI CCRYGG 3 cut(s) 336, 402, 771
BstF5I GGATG 2 cut(s) 42, 856
BstFNI CGCG 2 cut(s) 338, 404
BstH2I RGCGCY 2 cut(s) 310, 663
BstHHI GCGC 3 cut(s) 309, 409, 662
BstKTI GATC 5 cut(s) 385, 556, 670, 832, 865
BstMBI GATC 5 cut(s) 382, 553, 667, 829, 862
BstMWI GCNNNNNNNGC 7 cut(s) 142, 220, 237, 344, 356, 368, 410
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 2 cut(s) 338, 404
BstV2I GAAGAC 1 cut(s) 810
BtgI CCRYGG 3 cut(s) 336, 402, 771
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 2 cut(s) 42, 856
BtsIMutI CAGTG 3 cut(s) 34, 247, 373
BveI ACCTGC 2 cut(s) 10, 482
Cac8I GCNNGC 5 cut(s) 59, 66, 238, 411, 658
CfoI GCGC 3 cut(s) 309, 409, 662
Cfr42I CCGCGG 2 cut(s) 339, 405
CseI GACGC 1 cut(s) 280
Csp6I GTAC 3 cut(s) 12, 576, 781
CviAII CATG 3 cut(s) 103, 712, 868
CviQI GTAC 3 cut(s) 12, 576, 781
DdeI CTNAG 3 cut(s) 15, 69, 729
DinI GGCGCC 1 cut(s) 661
DpnI GATC 5 cut(s) 384, 555, 669, 831, 864
DpnII GATC 5 cut(s) 382, 553, 667, 829, 862
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 218
EgeI GGCGCC 1 cut(s) 661
EheI GGCGCC 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 106, 715, 871
FaiI YATR 5 cut(s) 104, 479, 648, 713, 869
FaqI GGGAC 3 cut(s) 263, 277, 420
FatI CATG 3 cut(s) 102, 711, 867
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 1 cut(s) 862
FokI GGATG 2 cut(s) 49, 863
GlaI GCGC 3 cut(s) 308, 408, 661
HaeII RGCGCY 2 cut(s) 310, 663
HgaI GACGC 1 cut(s) 280
HhaI GCGC 3 cut(s) 309, 409, 662
Hin1I GRCGYC 2 cut(s) 291, 660
Hin1II CATG 3 cut(s) 106, 715, 871
Hin6I GCGC 3 cut(s) 307, 407, 660
HinP1I GCGC 3 cut(s) 307, 407, 660
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 4 cut(s) 46, 167, 265, 854
Hpy166II GTNNAC 2 cut(s) 25, 781
Hpy188I TCNGA 6 cut(s) 51, 72, 142, 159, 272, 862
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 25, 781
HpyAV CCTTC 2 cut(s) 568, 762
HpyCH4III ACNGT 4 cut(s) 29, 368, 685, 876
HpyCH4IV ACGT 3 cut(s) 74, 642, 777
HpyCH4V TGCA 5 cut(s) 64, 231, 240, 371, 631
HpyF10VI GCNNNNNNNGC 7 cut(s) 142, 220, 237, 344, 356, 368, 410
HpyF3I CTNAG 3 cut(s) 15, 69, 729
HpySE526I ACGT 3 cut(s) 74, 642, 777
Hsp92I GRCGYC 2 cut(s) 291, 660
Hsp92II CATG 3 cut(s) 106, 715, 871
HspAI GCGC 3 cut(s) 307, 407, 660
KasI GGCGCC 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 862
KspI CCGCGG 2 cut(s) 339, 405
Kzo9I GATC 5 cut(s) 382, 553, 667, 829, 862
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 7 cut(s) 5, 235, 357, 477, 554, 642, 778
LweI GCATC 1 cut(s) 717
MaeII ACGT 3 cut(s) 74, 642, 777
MaeIII GTNAC 3 cut(s) 29, 188, 761
MalI GATC 5 cut(s) 384, 555, 669, 831, 864
MboI GATC 5 cut(s) 382, 553, 667, 829, 862
MboII GAAGA 6 cut(s) 515, 603, 677, 716, 815, 849
MfeI CAATTG 1 cut(s) 739
MluCI AATT 4 cut(s) 460, 570, 739, 796
Mly113I GGCGCC 1 cut(s) 660
MlyI GAGTC 2 cut(s) 55, 259
MnlI CCTC 9 cut(s) 99, 102, 237, 320, 373, 682, 738, 827, 852
MseI TTAA 2 cut(s) 497, 638
MslI CAYNNNNRTG 2 cut(s) 776, 849
MspA1I CMGCKG 4 cut(s) 82, 338, 347, 404
MunI CAATTG 1 cut(s) 739
MvnI CGCG 2 cut(s) 338, 404
MwoI GCNNNNNNNGC 7 cut(s) 142, 220, 237, 344, 356, 368, 410
NarI GGCGCC 1 cut(s) 660
NdeII GATC 5 cut(s) 382, 553, 667, 829, 862
NlaIII CATG 3 cut(s) 106, 715, 871
NlaIV GGNNCC 2 cut(s) 661, 693
NmuCI GTSAC 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 776
PcsI WCGNNNNNNNCGW 2 cut(s) 660, 816
PfeI GAWTC 2 cut(s) 167, 854
PleI GAGTC 2 cut(s) 54, 259
PluTI GGCGCC 1 cut(s) 663
PpsI GAGTC 2 cut(s) 54, 259
PsiI TTATAA 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 642
PspN4I GGNNCC 2 cut(s) 661, 693
PstI CTGCAG 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 82, 347
RsaI GTAC 3 cut(s) 13, 577, 782
RsaNI GTAC 3 cut(s) 12, 576, 781
RseI CAYNNNNRTG 2 cut(s) 776, 849
SacII CCGCGG 2 cut(s) 339, 405
SaqAI TTAA 2 cut(s) 497, 638
Sau3AI GATC 5 cut(s) 382, 553, 667, 829, 862
ScaI AGTACT 2 cut(s) 13, 577
SchI GAGTC 2 cut(s) 55, 259
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 229
SfoI GGCGCC 1 cut(s) 661
Sfr303I CCGCGG 2 cut(s) 339, 405
SgrBI CCGCGG 2 cut(s) 339, 405
SmiMI CAYNNNNRTG 2 cut(s) 776, 849
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 4 cut(s) 460, 570, 739, 796
SsiI CCGC 9 cut(s) 99, 295, 336, 338, 357, 360, 402, 404, 452
SspDI GGCGCC 1 cut(s) 659
SspI AATATT 1 cut(s) 721
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 29, 368, 685, 876
TaiI ACGT 3 cut(s) 77, 645, 780
TaqI TCGA 2 cut(s) 785, 810
TasI AATT 4 cut(s) 460, 570, 739, 796
TatI WGTACW 3 cut(s) 11, 575, 780
TauI GCSGC 2 cut(s) 362, 407
TfiI GAWTC 2 cut(s) 167, 854
Tru1I TTAA 2 cut(s) 497, 638
Tru9I TTAA 2 cut(s) 497, 638
TscAI CASTG 3 cut(s) 34, 254, 373
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 474, 515
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 3 cut(s) 34, 254, 373
XapI RAATTY 1 cut(s) 460
ZrmI AGTACT 2 cut(s) 13, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.