Rw5G006130

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017617
Physical Location & Seq
Forward (+)
6320977 .. 6322558
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006130.1

Sequence Viewer

Length: 888 bp
ATGGGATTGAGTACAAAGCAGGTTAGTAGTGATGGCTTGGATTGGAGCCAGACCTTGTTGCAAGCACAAAGCTTTGAGCTGCCAAAACCGCCTGTGGCGAGGCGGCAACAGCAACAAAGCCAGGAGCAATCGGAGCAGTTGAAGTGTCCGAGGTGTGAATCAACAAACACAAAGTTTTGTTACTACAACAACTACAACAAGACTCAGCCTAGGCACTTCTGCAGAGCTTGCAAGAGGCACTGGACCAACGGTGGAACGCTCCGAAACGTCCCTGTTGGTGGCCACGGTCGGAAAAACAAGCGCACCAGGAAACCGAACTCTAGTGCCTCCGCCGCCAAAATCACCACAAATGGTGCTAGTACTATTGCCACGACGACTAGGGTCAATAATACCAACTTGGTATTTGATCGAGCCGACGGTGTGCAAAGGCTTAACAGCCACTTGGCAATTGATGGAGAGCAAAGGCTCAACTCGCATACGGGAGTTCTTCTGCCTCAACAGAATTTAGTCACCACAAGTGAATTGGACAACCATATATTTTCATCGTCATCAGGTTTAAGTAGTACTACTATGCCTTTTAACTTTCTTCAAGCTGGTAGAGCCCAAGTACTGAGCTTTCCCTTCTCAAGCTCAAGTACTTCAAGTTCCTTTGACGCAATTTCAACATCTTTTCAATCCCCAAATGTTTGCAACTATCCCCAAGAATTCAAATCCATGGAGGAGCCAACCATCACCAGCATCATGCCCTCAACAACCATCACAATCCCGCAGGCTAATAATTCAAGCGTTGGCATGTACACATCAAACGACTGGAATTGGGAGGACATTGAAACCCTTGTTTCTACTGATCTCAATGTGCCTTGGGATGATTCTGATATGAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

295

Amino Acids

32.72

Weight (kDa)

8.21

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 45 - 101 6.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 5 cut(s) 89, 103, 330, 333, 767
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 502, 704
AfaI GTAC 6 cut(s) 13, 361, 565, 609, 637, 797
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 8 cut(s) 142, 590, 642, 663, 674, 709, 783, 830
AjnI CCWGG 2 cut(s) 120, 305
AluBI AGCT 6 cut(s) 72, 79, 227, 593, 615, 630
AluI AGCT 6 cut(s) 72, 79, 227, 593, 615, 630
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 502, 704
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 334, 502, 724
AvaII GGWCC 1 cut(s) 243
AvrII CCTAGG 1 cut(s) 209
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 66
BccI CCATC 4 cut(s) 26, 446, 737, 764
BciT130I CCWGG 2 cut(s) 122, 307
BfaI CTAG 4 cut(s) 210, 321, 357, 378
BfmI CTRYAG 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 3 cut(s) 80, 104, 333
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 3 cut(s) 81, 105, 334
BmcAI AGTACT 4 cut(s) 361, 565, 609, 637
Bme1390I CCNGG 2 cut(s) 122, 307
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 47, 723
BmrFI CCNGG 2 cut(s) 122, 307
BmsI GCATC 1 cut(s) 747
BoxI GACNNNNGTC 1 cut(s) 380
BpuEI CTTGAG 2 cut(s) 610, 616
BsaJI CCNNGG 5 cut(s) 149, 209, 283, 714, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 245, 815
BseBI CCWGG 2 cut(s) 122, 307
BseDI CCNNGG 5 cut(s) 149, 209, 283, 714, 860
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 2 cut(s) 218, 602
BseNI ACTGG 2 cut(s) 245, 815
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 2 cut(s) 406, 847
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 5 cut(s) 89, 103, 330, 333, 767
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 2 cut(s) 217, 603
BspLI GGNNCC 2 cut(s) 47, 723
BspMAI CTGCAG 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 2 cut(s) 245, 815
BssECI CCNNGG 5 cut(s) 149, 209, 283, 714, 860
BssMI GATC 2 cut(s) 406, 847
BssT1I CCWWGG 3 cut(s) 209, 714, 860
Bst2UI CCWGG 2 cut(s) 122, 307
Bst4CI ACNGT 3 cut(s) 251, 287, 419
BstAPI GCANNNNNTGC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 3 cut(s) 63, 229, 771
BstDEI CTNAG 2 cut(s) 204, 611
BstDSI CCRYGG 2 cut(s) 283, 714
BstF5I GGATG 1 cut(s) 871
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 409, 850
BstMBI GATC 2 cut(s) 406, 847
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 7 cut(s) 88, 109, 133, 228, 332, 472, 599
BstNI CCWGG 2 cut(s) 122, 307
BstNSI RCATGY 1 cut(s) 796
BstPAI GACNNNNGTC 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 120, 305
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 283, 714
BtsCI GGATG 1 cut(s) 871
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 3 cut(s) 63, 229, 771
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 662
Csp6I GTAC 6 cut(s) 12, 360, 564, 608, 636, 796
CviAII CATG 3 cut(s) 715, 742, 793
CviQI GTAC 6 cut(s) 12, 360, 564, 608, 636, 796
DdeI CTNAG 2 cut(s) 204, 611
DpnI GATC 2 cut(s) 408, 849
DpnII GATC 2 cut(s) 406, 847
EaeI YGGCCR 1 cut(s) 280
EciI GGCGGA 1 cut(s) 319
Eco130I CCWWGG 3 cut(s) 209, 714, 860
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 120, 305
EcoT14I CCWWGG 3 cut(s) 209, 714, 860
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 3 cut(s) 209, 714, 860
FaeI CATG 3 cut(s) 718, 745, 796
FaiI YATR 9 cut(s) 477, 534, 536, 572, 716, 743, 794, 878, 886
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 714, 741, 792
FauI CCCGC 1 cut(s) 774
Fnu4HI GCNGC 3 cut(s) 80, 104, 333
FokI GGATG 1 cut(s) 878
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 3 cut(s) 80, 104, 333
FspBI CTAG 4 cut(s) 210, 321, 357, 378
GlaI GCGC 1 cut(s) 302
GluI GCNGC 3 cut(s) 80, 104, 333
HaeIII GGCC 1 cut(s) 282
HgaI GACGC 1 cut(s) 662
HhaI GCGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 718, 745, 796
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 3 cut(s) 158, 202, 869
HphI GGTGA 3 cut(s) 334, 502, 724
Hpy166II GTNNAC 1 cut(s) 798
Hpy188I TCNGA 5 cut(s) 133, 150, 263, 291, 874
Hpy8I GTNNAC 1 cut(s) 798
Hpy99I CGWCG 2 cut(s) 376, 419
HpyAV CCTTC 1 cut(s) 631
HpyCH4III ACNGT 3 cut(s) 251, 287, 419
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 61, 222, 231, 424, 690
HpyF10VI GCNNNNNNNGC 7 cut(s) 88, 109, 133, 228, 332, 472, 599
HpyF3I CTNAG 2 cut(s) 204, 611
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 3 cut(s) 718, 745, 796
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 406, 847
LmnI GCTCC 5 cut(s) 45, 124, 133, 264, 721
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 747
MaeI CTAG 4 cut(s) 210, 321, 357, 378
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 179, 508
MalI GATC 2 cut(s) 408, 849
MboI GATC 2 cut(s) 406, 847
MboII GAAGA 2 cut(s) 479, 578
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 7 cut(s) 447, 502, 521, 657, 704, 778, 814
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 93, 144, 228, 337, 504, 712, 757, 814
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 3 cut(s) 432, 557, 579
Msp20I TGGCCA 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 122, 307
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 2 cut(s) 122, 307
MwoI GCNNNNNNNGC 7 cut(s) 88, 109, 133, 228, 332, 472, 599
NcoI CCATGG 1 cut(s) 714
NdeII GATC 2 cut(s) 406, 847
NlaIII CATG 3 cut(s) 718, 745, 796
NlaIV GGNNCC 2 cut(s) 47, 723
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 796
PfeI GAWTC 2 cut(s) 158, 869
PkrI GCNGC 3 cut(s) 81, 105, 334
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 120, 305
PspGI CCWGG 2 cut(s) 120, 305
PspN4I GGNNCC 2 cut(s) 47, 723
PspPI GGNCC 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 628, 660
PstI CTGCAG 1 cut(s) 224
RsaI GTAC 6 cut(s) 13, 361, 565, 609, 637, 797
RsaNI GTAC 6 cut(s) 12, 360, 564, 608, 636, 796
SaqAI TTAA 3 cut(s) 432, 557, 579
SatI GCNGC 3 cut(s) 80, 104, 333
Sau3AI GATC 2 cut(s) 406, 847
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 4 cut(s) 361, 565, 609, 637
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 122, 307
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 625, 631
SmoI CTYRAG 2 cut(s) 625, 631
Sse9I AATT 7 cut(s) 447, 502, 521, 657, 704, 778, 814
SsiI CCGC 5 cut(s) 89, 103, 330, 333, 767
SspMI CTAG 4 cut(s) 210, 321, 357, 378
StyD4I CCNGG 2 cut(s) 120, 305
StyI CCWWGG 3 cut(s) 209, 714, 860
TaaI ACNGT 3 cut(s) 251, 287, 419
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 409
TasI AATT 7 cut(s) 447, 502, 521, 657, 704, 778, 814
TatI WGTACW 6 cut(s) 11, 359, 563, 607, 635, 795
TauI GCSGC 2 cut(s) 106, 335
TfiI GAWTC 2 cut(s) 158, 869
Tru1I TTAA 3 cut(s) 432, 557, 579
Tru9I TTAA 3 cut(s) 432, 557, 579
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 1 cut(s) 531
TspRI CASTG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 2 cut(s) 502, 704
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmaJI CCTAGG 1 cut(s) 209
XspI CTAG 4 cut(s) 210, 321, 357, 378
ZrmI AGTACT 4 cut(s) 361, 565, 609, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.