pycom05g29470

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0017617
Physical Location & Seq
Forward (+)
29879000 .. 29879458
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29470.1

Sequence Viewer

Length: 459 bp
ATGATCGACCATAAGCGGGAAACTGCTGCGCAAGCTCTCTATCACGCACTTATCGGTCCCCAATCTTCGCTTCCGCAACAGAATTTGGACAACACAATCATATTTTCGTCAGCAGGTTTAAGTAGTACTACTACTTTGCCTTTTCTTCATCAAAGTAGAAATCTAATAACCTTTGATCCCTTCTCAAGCTCAATTAGTACTACTACTTCAAGTTCCTTTGACACAAACCTCTCTTCAATCTCAACATCTTTGCAATCCTCAAACGTTTATAACTACGCTGCCGCTGAAGATCAGTTCAAAGCCACCGTAGAGGAGCCAACCATCACAAGCATCATGCCAAATATTCTTCCCCAGCAGCCTAACTGGAAAACCCCCTCCCCAAGCAACGCCGTGGATGTGTACTCGAACGACTGGAATTGGGAAGACATCGAAACCCTCGTTTCTACTGATCGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

4.4

Isoelectric Point (pI)

73.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
Acc16I TGCGCA 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 104
AciI CCGC 3 cut(s) 16, 74, 282
AclI AACGTT 1 cut(s) 264
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 127, 199, 401
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 210, 237, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 2 cut(s) 35, 189
AluI AGCT 2 cut(s) 35, 189
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 26, 278, 355
ApoI RAATTY 1 cut(s) 82
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 56
AvaII GGWCC 1 cut(s) 56
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbsI GAAGAC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 13, 265, 367
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 4 cut(s) 27, 279, 282, 356
BlsI GCNGC 4 cut(s) 28, 280, 283, 357
BmcAI AGTACT 2 cut(s) 127, 199
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 58, 315
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 368, 416
BseCI ATCGAT 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 368, 416
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 13, 265, 367
BseYI CCCAGC 1 cut(s) 351
Bsh1285I CGRYCG 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 451
BsiEI CGRYCG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 42
Bsp143I GATC 5 cut(s) 3, 175, 289, 448, 452
BspACI CCGC 3 cut(s) 16, 74, 282
BspDI ATCGAT 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 58, 315
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 368, 416
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 5 cut(s) 3, 175, 289, 448, 452
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 400
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 5 cut(s) 6, 178, 292, 451, 455
BstMBI GATC 5 cut(s) 3, 175, 289, 448, 452
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 13, 265, 367
BstV2I GAAGAC 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 451
BsuTUI ATCGAT 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 400
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 451
Csp6I GTAC 3 cut(s) 126, 198, 400
CviAII CATG 1 cut(s) 334
CviJI RGCY 5 cut(s) 35, 189, 302, 316, 358
CviKI_1 RGCY 5 cut(s) 35, 189, 302, 316, 358
CviQI GTAC 3 cut(s) 126, 198, 400
DpnI GATC 5 cut(s) 5, 177, 291, 450, 454
DpnII GATC 5 cut(s) 3, 175, 289, 448, 452
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 306
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 12, 101, 270, 335
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 4 cut(s) 27, 279, 282, 356
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 27, 279, 282, 356
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 1 cut(s) 30
GluI GCNGC 4 cut(s) 27, 279, 282, 356
GsaI CCCAGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 5 cut(s) 3, 175, 289, 448, 452
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 4 cut(s) 99, 349, 365, 397
Lsp1109I GCAGC 3 cut(s) 13, 265, 367
LweI GCATC 1 cut(s) 339
MaeII ACGT 1 cut(s) 264
MalI GATC 5 cut(s) 5, 177, 291, 450, 454
MboI GATC 5 cut(s) 3, 175, 289, 448, 452
MboII GAAGA 6 cut(s) 57, 137, 225, 299, 338, 434
MluCI AATT 3 cut(s) 82, 192, 415
MnlI CCTC 5 cut(s) 239, 268, 304, 385, 446
MseI TTAA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 5 cut(s) 3, 175, 289, 448, 452
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 58, 315
NsbI TGCGCA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PkrI GCNGC 4 cut(s) 28, 280, 283, 357
Ple19I CGATCG 1 cut(s) 455
PsiI TTATAA 1 cut(s) 270
Psp1406I AACGTT 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 58, 315
PspPI GGNCC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 455
RsaI GTAC 3 cut(s) 127, 199, 401
RsaNI GTAC 3 cut(s) 126, 198, 400
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 4 cut(s) 27, 279, 282, 356
Sau3AI GATC 5 cut(s) 3, 175, 289, 448, 452
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 2 cut(s) 127, 199
SetI ASST 6 cut(s) 37, 118, 173, 191, 231, 267
SfaNI GCATC 1 cut(s) 339
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 82, 192, 415
SsiI CCGC 3 cut(s) 16, 74, 282
SspI AATATT 1 cut(s) 343
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 267
TaqI TCGA 4 cut(s) 6, 404, 429, 451
TaqII GACCGA 1 cut(s) 44
TasI AATT 3 cut(s) 82, 192, 415
TatI WGTACW 3 cut(s) 125, 197, 399
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 3 cut(s) 26, 278, 355
TspDTI ATGAA 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 82
ZrmI AGTACT 2 cut(s) 127, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.