MD05G1318600.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017617
Physical Location & Seq
Forward (+)
44665208 .. 44666083
876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1318600.v1.1.491

Sequence Viewer

Length: 876 bp
ATGGGATTGAGTACTAAGCAGGTCAACAGTGACGGGCTGGATTGGAGTCAGACCAGCTTGCTGCAAGCTCAGACGTTCCAGCTGCCAAAACCACCAACCGCCGTGAGGAGGCAGCTTCAACAAAATCAGCAGCAGCAAGCTGAGCCATTAAAGTGTCCGAGATGTGAATCAACGAACACAAAGTTTTGTTACTACAACAACTACAACAAGTCGCAGCCAAGGCACTTCTGCAGAGCTTGCAAGAGGCACTGGACAAAAGGCGGGACTCTTCGAAACGTCCCGGTTGGTGGCGTCCGTAAAAACAAGCGCCTCAAAAAGTCATCAAACACTTCTCCCTCAGAAGCAGCTGCCACAACCGTTGCAAACACTGCGGCGATTGATGATCACCATAAGCGGGAAACTGCTGCGGATGCTCTCTATCACGCACTTATCGGTCCCCAATCTTCGCTTCCGCAACAGAATTTGGACAACACAATCATATTTTCGTCAGCAGGTTTAAGTAGTAGTACTACTTTGCCTTTTCTTCATCAAAGTAGAAATCTAATAACCTTCGATCCCTTCTCAAGCTCAATTAGTACTACTACTTCAAGTTCCTTTGACACAAACCTCTCTTCAATCTCAACATCTTTGCAATCCTCAAACGTTTATAACTACGCTGGCGCCGAAGATCAGTTCAAAGCCACCGTAGAGGAGCCAACCATCACAAGCATCATGCCAAATATTCTTCCCCAGCAGCCTAACTGGAAAGCCCCCTCTCCAAGCAACGCCGTGGATGTGTACTCGAACGACTGGAATTGGGAAGACATCGAAACCCTCGTTTCTACTGATCTCAACCTGCTTCATTGGGATGATTCTTCTGATCACATACATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

292

Amino Acids

32.33

Weight (kDa)

7.11

Isoelectric Point (pI)

68.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 49 - 102 9.4e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc36I ACCTGC 3 cut(s) 10, 482, 843
AccB1I GGYRCC 1 cut(s) 659
AciI CCGC 6 cut(s) 99, 261, 371, 394, 407, 452
AclI AACGTT 1 cut(s) 642
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 1 cut(s) 460
AcyI GRCGYC 2 cut(s) 291, 660
AfaI GTAC 4 cut(s) 13, 508, 577, 779
AfiI CCNNNNNNNGG 4 cut(s) 105, 108, 287, 394
AgsI TTSAA 4 cut(s) 119, 588, 615, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 8 cut(s) 57, 68, 82, 115, 140, 236, 347, 567
AluI AGCT 8 cut(s) 57, 68, 82, 115, 140, 236, 347, 567
AlwI GGATC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 2 cut(s) 309, 662
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 659
BarI GAAGNNNNNNTAC 2 cut(s) 568, 600
BbsI GAAGAC 1 cut(s) 807
BccI CCATC 1 cut(s) 707
BceAI ACGGC 2 cut(s) 86, 752
BclI TGATCA 2 cut(s) 382, 859
BcnI CCSGG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 2 cut(s) 310, 663
BfuAI ACCTGC 3 cut(s) 10, 482, 843
BlpI GCTNAGC 1 cut(s) 141
BmcAI AGTACT 3 cut(s) 13, 508, 577
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 3 cut(s) 436, 661, 693
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 400, 717
BpiI GAAGAC 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 547
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 2 cut(s) 291, 660
BsaJI CCNNGG 2 cut(s) 218, 768
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 108, 287, 394
Bse1I ACTGG 3 cut(s) 254, 746, 794
Bse8I GATNNNNATC 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 218, 768
BseGI GGATG 3 cut(s) 415, 778, 853
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 4 cut(s) 105, 108, 287, 394
BseMII CTCAG 3 cut(s) 83, 132, 351
BseNI ACTGG 3 cut(s) 254, 746, 794
BseRI GAGGAG 2 cut(s) 121, 704
BseYI CCCAGC 1 cut(s) 729
BshNI GGYRCC 1 cut(s) 659
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 3 cut(s) 263, 277, 420
BslI CCNNNNNNNGG 4 cut(s) 105, 108, 287, 394
BsmFI GGGAC 3 cut(s) 263, 277, 420
Bsp119I TTCGAA 1 cut(s) 271
Bsp143I GATC 5 cut(s) 382, 553, 667, 826, 859
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 6 cut(s) 99, 261, 371, 394, 407, 452
BspCNI CTCAG 3 cut(s) 82, 133, 350
BspLI GGNNCC 3 cut(s) 436, 661, 693
BspMAI CTGCAG 1 cut(s) 233
BspMI ACCTGC 3 cut(s) 10, 482, 843
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 659
BsrI ACTGG 3 cut(s) 254, 746, 794
BssECI CCNNGG 2 cut(s) 218, 768
BssMI GATC 5 cut(s) 382, 553, 667, 826, 859
BssNI GRCGYC 2 cut(s) 291, 660
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 29, 358, 685
Bst6I CTCTTC 2 cut(s) 273, 616
BstACI GRCGYC 2 cut(s) 291, 660
BstAPI GCANNNNNTGC 2 cut(s) 237, 368
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 5 cut(s) 59, 66, 138, 238, 658
BstDEI CTNAG 4 cut(s) 15, 69, 141, 337
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 3 cut(s) 415, 778, 853
BstH2I RGCGCY 2 cut(s) 310, 663
BstHHI GCGC 2 cut(s) 309, 662
BstKTI GATC 5 cut(s) 385, 556, 670, 829, 862
BstMBI GATC 5 cut(s) 382, 553, 667, 826, 859
BstMWI GCNNNNNNNGC 5 cut(s) 142, 220, 237, 368, 410
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 3 cut(s) 415, 778, 853
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 34, 247, 366
BveI ACCTGC 3 cut(s) 10, 482, 843
Cac8I GCNNGC 5 cut(s) 59, 66, 138, 238, 658
CfoI GCGC 2 cut(s) 309, 662
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 280
Csp6I GTAC 4 cut(s) 12, 507, 576, 778
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 1 cut(s) 712
CviQI GTAC 4 cut(s) 12, 507, 576, 778
DdeI CTNAG 4 cut(s) 15, 69, 141, 337
DinI GGCGCC 1 cut(s) 661
DpnI GATC 5 cut(s) 384, 555, 669, 828, 861
DpnII GATC 5 cut(s) 382, 553, 667, 826, 859
Eam1104I CTCTTC 2 cut(s) 273, 616
EarI CTCTTC 2 cut(s) 273, 616
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 218
EgeI GGCGCC 1 cut(s) 661
EheI GGCGCC 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 715
FaiI YATR 5 cut(s) 390, 479, 648, 713, 866
FaqI GGGAC 3 cut(s) 263, 277, 420
FatI CATG 1 cut(s) 711
FauI CCCGC 2 cut(s) 254, 387
FbaI TGATCA 2 cut(s) 382, 859
FokI GGATG 3 cut(s) 422, 785, 860
GlaI GCGC 2 cut(s) 308, 661
GsaI CCCAGC 1 cut(s) 733
HaeII RGCGCY 2 cut(s) 310, 663
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 309, 662
Hin1I GRCGYC 2 cut(s) 291, 660
Hin1II CATG 1 cut(s) 715
Hin6I GCGC 2 cut(s) 307, 660
HinP1I GCGC 2 cut(s) 307, 660
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 46, 167, 265, 851
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 25, 778
Hpy188I TCNGA 5 cut(s) 51, 72, 159, 340, 859
Hpy8I GTNNAC 2 cut(s) 25, 778
HpyAV CCTTC 2 cut(s) 559, 568
HpyCH4III ACNGT 3 cut(s) 29, 358, 685
HpyCH4IV ACGT 3 cut(s) 74, 276, 642
HpyCH4V TGCA 5 cut(s) 64, 231, 240, 362, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 220, 237, 368, 410
HpyF3I CTNAG 4 cut(s) 15, 69, 141, 337
HpySE526I ACGT 3 cut(s) 74, 276, 642
Hsp92I GRCGYC 2 cut(s) 291, 660
Hsp92II CATG 1 cut(s) 715
HspAI GCGC 2 cut(s) 307, 660
KasI GGCGCC 1 cut(s) 659
Ksp22I TGATCA 2 cut(s) 382, 859
Kzo9I GATC 5 cut(s) 382, 553, 667, 826, 859
LmnI GCTCC 1 cut(s) 691
LweI GCATC 2 cut(s) 400, 717
MaeII ACGT 3 cut(s) 74, 276, 642
MaeIII GTNAC 2 cut(s) 29, 188
MalI GATC 5 cut(s) 384, 555, 669, 828, 861
MboI GATC 5 cut(s) 382, 553, 667, 826, 859
MboII GAAGA 8 cut(s) 260, 435, 515, 603, 677, 716, 812, 846
MluCI AATT 3 cut(s) 460, 570, 793
Mly113I GGCGCC 1 cut(s) 660
MlyI GAGTC 2 cut(s) 55, 259
MseI TTAA 2 cut(s) 149, 497
MslI CAYNNNNRTG 2 cut(s) 151, 846
MspA1I CMGCKG 2 cut(s) 82, 347
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 281
MwoI GCNNNNNNNGC 5 cut(s) 142, 220, 237, 368, 410
NarI GGCGCC 1 cut(s) 660
NciI CCSGG 1 cut(s) 281
NdeII GATC 5 cut(s) 382, 553, 667, 826, 859
NlaIII CATG 1 cut(s) 715
NlaIV GGNNCC 3 cut(s) 436, 661, 693
NmuCI GTSAC 1 cut(s) 29
NspV TTCGAA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 2 cut(s) 660, 813
PfeI GAWTC 2 cut(s) 167, 851
PleI GAGTC 2 cut(s) 54, 259
PluTI GGCGCC 1 cut(s) 663
PpsI GAGTC 2 cut(s) 54, 259
PsiI TTATAA 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 436, 661, 693
PspPI GGNCC 1 cut(s) 434
PstI CTGCAG 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 82, 347
RsaI GTAC 4 cut(s) 13, 508, 577, 779
RsaNI GTAC 4 cut(s) 12, 507, 576, 778
RseI CAYNNNNRTG 2 cut(s) 151, 846
SaqAI TTAA 2 cut(s) 149, 497
Sau3AI GATC 5 cut(s) 382, 553, 667, 826, 859
Sau96I GGNCC 1 cut(s) 434
ScaI AGTACT 3 cut(s) 13, 508, 577
SchI GAGTC 2 cut(s) 55, 259
ScrFI CCNGG 1 cut(s) 281
SfaNI GCATC 2 cut(s) 400, 717
SfcI CTRYAG 1 cut(s) 229
SfoI GGCGCC 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 2 cut(s) 151, 846
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 3 cut(s) 460, 570, 793
SsiI CCGC 6 cut(s) 99, 261, 371, 394, 407, 452
SspDI GGCGCC 1 cut(s) 659
SspI AATATT 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 3 cut(s) 29, 358, 685
TaiI ACGT 3 cut(s) 77, 279, 645
TaqI TCGA 4 cut(s) 271, 552, 782, 807
TaqII GACCGA 1 cut(s) 422
TasI AATT 3 cut(s) 460, 570, 793
TatI WGTACW 4 cut(s) 11, 506, 575, 777
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 167, 851
Tru1I TTAA 2 cut(s) 149, 497
Tru9I TTAA 2 cut(s) 149, 497
TscAI CASTG 3 cut(s) 34, 254, 373
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 515, 830
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 3 cut(s) 34, 254, 373
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 1 cut(s) 460
ZrmI AGTACT 3 cut(s) 13, 508, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.