Rh5BG055200

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017617
Physical Location & Seq
Reverse (-)
4500591 .. 4509110
8520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG055200.1

Sequence Viewer

Length: 978 bp
ATGGATCTCCTTGTGTTGATTGATGAAGTTGTATATGAATTTGGAGAGAGTAAGGATGAGGTCAAGCGTCTAGTGCGTAAGTGTATGGAGATGGGATTGAGTACAAAGCAGGTTAGTAGTGATGGCTTGGATTGGAGCCAGACCTTGTTGCAAGCACAAAGCTTTGAGCTGCCAAAACCGCCTGTGGCGAGGCGGCAACAGCAACAAAGCCAGGAGCAATCGGAGCAGTTGAAGTGTCCGAGGTGTGAATCAACAAACACAAAGTTCTGTTACTACAACAACTACAACAAGACTCAGCCTAGGCACTTCTGCAGAGCTTGCAAGAGGCACTGGACCAACGGTGGAACACTCCGAAACGTCCCTGTTGGTGGCCATGGTCGGAAAAACAAGCGCACCAGGAAACCAAACTCTAGTGCCTCCGCCGCCAAAACCACCACAAATGGTGCTAGTACTATTGCCACGACGACTAGGGTCAATAATACCAACTTGGTATTTGATCGAACCGACGGTGTGCAAAGGCTTAACAGCCACTTGGCAATTGATGGAGAGCAAAGGCTCAACTCGCATACGGGAGTTCTTCTTCCTCAACAGAATCTAATCACCTCAAGTGAATTGGACAACCATATATTTTCTTCGTCATCAGGTTTAAGTAGTACTACTATGCCTTATAATTTTCTTCAAGCTGGTAGAGCCCAAGTACTGAGCTTTCCCTTCTCAAGCTCAAGTACTTCAAGTTCCTTTGACGCAATTTCAACATCTTTTCAATCCCCAAATGTTTGCAACTACCCCCAAGAATTCAAATCCATGGAGGAGCCAACCATCACCAGCATCATGCCCTCAACAACCATCACAATCCCGCAGGCAAATAATTCAAGCGTCGGCATGTACACATCAAACGACTGGAATTGGGAGGACATTGAAACCCTTGTTTCTACTGATCTCAATGTGCCTTGGGATGATTCTGATATGAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

325

Amino Acids

36.32

Weight (kDa)

6.6

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 75 - 131 7.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 5 cut(s) 179, 193, 420, 423, 857
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 38, 794
AfaI GTAC 6 cut(s) 103, 451, 655, 699, 727, 887
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 8 cut(s) 232, 680, 732, 753, 764, 799, 873, 920
AjnI CCWGG 2 cut(s) 210, 395
AluBI AGCT 6 cut(s) 162, 169, 317, 683, 705, 720
AluI AGCT 6 cut(s) 162, 169, 317, 683, 705, 720
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 38, 794
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 592, 814
AvaII GGWCC 1 cut(s) 333
AvrII CCTAGG 1 cut(s) 299
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 1 cut(s) 694
BbvI GCAGC 1 cut(s) 156
BccI CCATC 5 cut(s) 85, 116, 536, 827, 854
BciT130I CCWGG 2 cut(s) 212, 397
BfaI CTAG 5 cut(s) 71, 300, 411, 447, 468
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 3 cut(s) 170, 194, 423
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 3 cut(s) 171, 195, 424
BmcAI AGTACT 4 cut(s) 451, 655, 699, 727
Bme1390I CCNGG 2 cut(s) 212, 397
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 137, 813
BmrFI CCNGG 2 cut(s) 212, 397
BmsI GCATC 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 470
BpuEI CTTGAG 3 cut(s) 589, 700, 706
BsaJI CCNNGG 5 cut(s) 239, 299, 373, 804, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 335, 905
BseBI CCWGG 2 cut(s) 212, 397
BseDI CCNNGG 5 cut(s) 239, 299, 373, 804, 950
BseGI GGATG 2 cut(s) 61, 961
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 308, 692
BseNI ACTGG 2 cut(s) 335, 905
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 372
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 3 cut(s) 4, 496, 937
Bsp19I CCATGG 2 cut(s) 373, 804
BspACI CCGC 5 cut(s) 179, 193, 420, 423, 857
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 2 cut(s) 307, 693
BspLI GGNNCC 2 cut(s) 137, 813
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 2 cut(s) 335, 905
BssECI CCNNGG 5 cut(s) 239, 299, 373, 804, 950
BssMI GATC 3 cut(s) 4, 496, 937
BssT1I CCWWGG 4 cut(s) 299, 373, 804, 950
Bst2UI CCWGG 2 cut(s) 212, 397
Bst4CI ACNGT 2 cut(s) 341, 509
BstAPI GCANNNNNTGC 1 cut(s) 318
BstAUI TGTACA 1 cut(s) 885
BstC8I GCNNGC 3 cut(s) 153, 319, 861
BstDEI CTNAG 2 cut(s) 294, 701
BstDSI CCRYGG 2 cut(s) 373, 804
BstF5I GGATG 2 cut(s) 61, 961
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 7, 499, 940
BstMBI GATC 3 cut(s) 4, 496, 937
BstMWI GCNNNNNNNGC 8 cut(s) 73, 178, 199, 223, 318, 422, 562, 689
BstNI CCWGG 2 cut(s) 212, 397
BstNSI RCATGY 1 cut(s) 886
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 210, 395
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 2 cut(s) 373, 804
BtsCI GGATG 2 cut(s) 61, 961
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 153, 319, 861
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 3 cut(s) 56, 752, 865
Csp6I GTAC 6 cut(s) 102, 450, 654, 698, 726, 886
CviAII CATG 4 cut(s) 374, 805, 832, 883
CviQI GTAC 6 cut(s) 102, 450, 654, 698, 726, 886
DdeI CTNAG 2 cut(s) 294, 701
DpnI GATC 3 cut(s) 6, 498, 939
DpnII GATC 3 cut(s) 4, 496, 937
EaeI YGGCCR 1 cut(s) 370
EciI GGCGGA 1 cut(s) 409
Eco130I CCWWGG 4 cut(s) 299, 373, 804, 950
Eco24I GRGCYC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 210, 395
EcoT14I CCWWGG 4 cut(s) 299, 373, 804, 950
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 4 cut(s) 299, 373, 804, 950
FaeI CATG 4 cut(s) 377, 808, 835, 886
FaqI GGGAC 1 cut(s) 344
FatI CATG 4 cut(s) 373, 804, 831, 882
FauI CCCGC 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 170, 194, 423
FokI GGATG 2 cut(s) 68, 968
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 3 cut(s) 170, 194, 423
FspBI CTAG 5 cut(s) 71, 300, 411, 447, 468
GlaI GCGC 1 cut(s) 392
GluI GCNGC 3 cut(s) 170, 194, 423
HaeIII GGCC 1 cut(s) 372
HgaI GACGC 3 cut(s) 56, 752, 865
HhaI GCGC 1 cut(s) 393
Hin1II CATG 4 cut(s) 377, 808, 835, 886
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 4 cut(s) 248, 292, 592, 959
HphI GGTGA 2 cut(s) 592, 814
Hpy166II GTNNAC 1 cut(s) 888
Hpy188I TCNGA 5 cut(s) 223, 240, 353, 381, 964
Hpy8I GTNNAC 1 cut(s) 888
Hpy99I CGWCG 3 cut(s) 466, 509, 881
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 341, 509
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 5 cut(s) 151, 312, 321, 514, 780
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 178, 199, 223, 318, 422, 562, 689
HpyF3I CTNAG 2 cut(s) 294, 701
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 4 cut(s) 377, 808, 835, 886
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 4, 496, 937
LmnI GCTCC 4 cut(s) 135, 214, 223, 811
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 837
MaeI CTAG 5 cut(s) 71, 300, 411, 447, 468
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 6, 498, 939
MboI GATC 3 cut(s) 4, 496, 937
MboII GAAGA 4 cut(s) 569, 572, 624, 668
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 8 cut(s) 38, 537, 611, 670, 747, 794, 868, 904
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 359
Mox20I TGGCCA 1 cut(s) 372
MscI TGGCCA 1 cut(s) 372
MseI TTAA 2 cut(s) 522, 647
Msp20I TGGCCA 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 212, 397
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 2 cut(s) 212, 397
MwoI GCNNNNNNNGC 8 cut(s) 73, 178, 199, 223, 318, 422, 562, 689
NcoI CCATGG 2 cut(s) 373, 804
NdeII GATC 3 cut(s) 4, 496, 937
NlaIII CATG 4 cut(s) 377, 808, 835, 886
NlaIV GGNNCC 2 cut(s) 137, 813
NspI RCATGY 1 cut(s) 886
PfeI GAWTC 3 cut(s) 248, 592, 959
PkrI GCNGC 3 cut(s) 171, 195, 424
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PshAI GACNNNNGTC 1 cut(s) 470
PsiI TTATAA 1 cut(s) 669
Psp6I CCWGG 2 cut(s) 210, 395
PspGI CCWGG 2 cut(s) 210, 395
PspN4I GGNNCC 2 cut(s) 137, 813
PspPI GGNCC 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 718, 750
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 6 cut(s) 103, 451, 655, 699, 727, 887
RsaNI GTAC 6 cut(s) 102, 450, 654, 698, 726, 886
SaqAI TTAA 2 cut(s) 522, 647
SatI GCNGC 3 cut(s) 170, 194, 423
Sau3AI GATC 3 cut(s) 4, 496, 937
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 4 cut(s) 451, 655, 699, 727
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 212, 397
SduI GDGCHC 1 cut(s) 694
SfaNI GCATC 1 cut(s) 837
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 604, 715, 721
SmoI CTYRAG 3 cut(s) 604, 715, 721
Sse9I AATT 8 cut(s) 38, 537, 611, 670, 747, 794, 868, 904
SsiI CCGC 5 cut(s) 179, 193, 420, 423, 857
SspMI CTAG 5 cut(s) 71, 300, 411, 447, 468
StyD4I CCNGG 2 cut(s) 210, 395
StyI CCWWGG 4 cut(s) 299, 373, 804, 950
TaaI ACNGT 2 cut(s) 341, 509
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 499
TasI AATT 8 cut(s) 38, 537, 611, 670, 747, 794, 868, 904
TatI WGTACW 6 cut(s) 101, 449, 653, 697, 725, 885
TauI GCSGC 2 cut(s) 196, 425
TfiI GAWTC 3 cut(s) 248, 592, 959
Tru1I TTAA 2 cut(s) 522, 647
Tru9I TTAA 2 cut(s) 522, 647
TscAI CASTG 1 cut(s) 335
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 39, 51
TspRI CASTG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 2 cut(s) 38, 794
XceI RCATGY 1 cut(s) 886
XmaJI CCTAGG 1 cut(s) 299
XspI CTAG 5 cut(s) 71, 300, 411, 447, 468
ZrmI AGTACT 4 cut(s) 451, 655, 699, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.