Prupe.4G042500_v2.0.a1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017617
Physical Location & Seq
Reverse (-)
2001506 .. 2003763
2258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G042500.1

Sequence Viewer

Length: 837 bp
ATGGGTTTGAGTACCAAGCAAGTTTCTAGTGATGGGCTCGATTGGAGCCAGGCCAGCTTGTTGCAAGGTCAGACTTTTCAGCTCCCAAAATCACCTTCTGCCATGAGGAGGCAACAACAGCAACAACCTGAGCCTTTGAAGTGCCCAAGGTGTGAATCTACCAACACAAAGTTCTGCTACTACAACAACTACAACAAGCAACAGCCAAGGCACTTCTGCAGAGCTTGCAAGCGGCATTGGACCAAAGGCGGCACTCTCCGGAACGTCCCTGTTGGCGGTGGCCGCAAAAACAAACGCCTCAAGAAATCATCAAACAGTACTTCTGCCTCTGCTGCAGCCACAACAACCACCACAAACAGTGCGGCAATTGATCAAACAGATCACCAACAGCAGAAACCCATGTCTCAAGTTTTCTATCAGGCGCTGCCTCAACAGAATTTGGATAATACTATCATCTTTTCGTCCTCATCATCACCGGGTTTAAGTGCCAGTACTCTGCCTTTCCTTCATCAGAGTGGAAACTTGAGCTTTCCCTTCTCAAGCTCAATTAGCACCACTTCAAGTTCCTTTGACACAAACTTGTCTTCCATCTCAACATCTTTGCAATCCTCAAATGTTTATAACTACGCCACCGTGGCAGCCGAAGATCAATTCAAAGCCATGGAGGAGCCAACCATTACAAGCATCATGCCCAACATTTCTCAGCCTAATTGGAAAGTGCCCACTTCAAGCAACGCCATGGATGTGTACTCAAACGACTGGAACTGGGAAGACATTGAAACCCTTGTTTCTACTGATCTCAATCTGCCTTGGGACGGCTCTGATATAAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

279

Amino Acids

30.73

Weight (kDa)

8.76

Isoelectric Point (pI)

65.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 5 cut(s) 232, 249, 276, 283, 362
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 436
AfaI GTAC 4 cut(s) 13, 319, 493, 749
AfiI CCNNNNNNNGG 3 cut(s) 108, 275, 815
AgsI TTSAA 5 cut(s) 139, 561, 655, 729, 779
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 4 cut(s) 79, 111, 155, 187
AluBI AGCT 5 cut(s) 57, 82, 224, 528, 543
AluI AGCT 5 cut(s) 57, 82, 224, 528, 543
Alw26I GTCTC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 2 cut(s) 51, 280
ApeKI GCWGC 4 cut(s) 332, 335, 424, 638
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 84, 374, 465
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 146, 723
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 576, 777
BbvI GCAGC 4 cut(s) 319, 347, 411, 650
BccI CCATC 2 cut(s) 26, 596
BceAI ACGGC 1 cut(s) 832
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 217, 333
BfoI RGCGCY 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 635
BisI GCNGC 8 cut(s) 233, 250, 283, 333, 336, 363, 425, 639
BlsI GCNGC 8 cut(s) 234, 251, 284, 334, 337, 364, 426, 640
BmcAI AGTACT 2 cut(s) 319, 493
Bme1390I CCNGG 2 cut(s) 50, 477
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 47, 669
BmrFI CCNGG 2 cut(s) 50, 477
BmrI ACTGGG 1 cut(s) 775
BmsI GCATC 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 775
BpiI GAAGAC 2 cut(s) 576, 777
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 4 cut(s) 284, 390, 523, 544
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 6 cut(s) 146, 206, 633, 660, 738, 809
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 275, 815
Bse1I ACTGG 3 cut(s) 489, 764, 770
Bse8I GATNNNNATC 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 258
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 6 cut(s) 146, 206, 633, 660, 738, 809
BseGI GGATG 1 cut(s) 748
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 3 cut(s) 108, 275, 815
BseMII CTCAG 2 cut(s) 120, 716
BseNI ACTGG 3 cut(s) 489, 764, 770
BseRI GAGGAG 2 cut(s) 121, 680
BseSI GKGCMC 2 cut(s) 146, 723
BseXI GCAGC 4 cut(s) 319, 347, 411, 650
BshFI GGCC 2 cut(s) 53, 282
BsiSI CCGG 2 cut(s) 259, 476
BslFI GGGAC 2 cut(s) 251, 827
BslI CCNNNNNNNGG 3 cut(s) 108, 275, 815
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 251, 827
BsnI GGCC 2 cut(s) 53, 282
Bsp1286I GDGCHC 3 cut(s) 39, 146, 723
Bsp13I TCCGGA 1 cut(s) 258
Bsp143I GATC 4 cut(s) 370, 379, 646, 796
Bsp19I CCATGG 2 cut(s) 660, 738
BspACI CCGC 5 cut(s) 232, 249, 276, 283, 362
BspANI GGCC 2 cut(s) 53, 282
BspCNI CTCAG 2 cut(s) 121, 715
BspEI TCCGGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 47, 669
BspMAI CTGCAG 2 cut(s) 221, 337
BsrI ACTGG 3 cut(s) 489, 764, 770
BssECI CCNNGG 6 cut(s) 146, 206, 633, 660, 738, 809
BssMI GATC 4 cut(s) 370, 379, 646, 796
BssT1I CCWWGG 5 cut(s) 146, 206, 660, 738, 809
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 317, 359, 634
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 55, 226, 230
BstDEI CTNAG 2 cut(s) 129, 702
BstDSI CCRYGG 3 cut(s) 633, 660, 738
BstF5I GGATG 1 cut(s) 748
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 4 cut(s) 373, 382, 649, 799
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 4 cut(s) 370, 379, 646, 796
BstMWI GCNNNNNNNGC 7 cut(s) 54, 118, 225, 282, 332, 549, 635
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 475
BstSFI CTRYAG 2 cut(s) 217, 333
BstSLI GKGCMC 2 cut(s) 146, 723
BstV1I GCAGC 4 cut(s) 319, 347, 411, 650
BstV2I GAAGAC 2 cut(s) 576, 777
BsuRI GGCC 2 cut(s) 53, 282
BtgI CCRYGG 3 cut(s) 633, 660, 738
BtsCI GGATG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 55, 226, 230
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 4 cut(s) 12, 318, 492, 748
CviAII CATG 5 cut(s) 103, 400, 661, 688, 739
CviQI GTAC 4 cut(s) 12, 318, 492, 748
DdeI CTNAG 2 cut(s) 129, 702
DpnI GATC 4 cut(s) 372, 381, 648, 798
DpnII GATC 4 cut(s) 370, 379, 646, 796
EaeI YGGCCR 1 cut(s) 280
Eco130I CCWWGG 5 cut(s) 146, 206, 660, 738, 809
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 5 cut(s) 146, 206, 660, 738, 809
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 5 cut(s) 146, 206, 660, 738, 809
FaeI CATG 5 cut(s) 106, 403, 664, 691, 742
FaiI YATR 8 cut(s) 104, 401, 621, 662, 689, 740, 827, 835
FaqI GGGAC 2 cut(s) 251, 827
FatI CATG 5 cut(s) 102, 399, 660, 687, 738
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 8 cut(s) 233, 250, 283, 333, 336, 363, 425, 639
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 8 cut(s) 233, 250, 283, 333, 336, 363, 425, 639
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 423
GluI GCNGC 8 cut(s) 233, 250, 283, 333, 336, 363, 425, 639
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 53, 282
HapII CCGG 2 cut(s) 259, 476
HhaI GCGC 1 cut(s) 424
Hin1II CATG 5 cut(s) 106, 403, 664, 691, 742
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 259, 476
HphI GGTGA 3 cut(s) 84, 374, 465
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 3 cut(s) 72, 513, 823
Hpy188III TCNNGA 2 cut(s) 259, 301
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 3 cut(s) 105, 515, 544
HpyCH4III ACNGT 3 cut(s) 317, 359, 634
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 64, 219, 228, 335, 604
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 118, 225, 282, 332, 549, 635
HpyF3I CTNAG 2 cut(s) 129, 702
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 5 cut(s) 106, 403, 664, 691, 742
HspAI GCGC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 370, 379, 646, 796
LmnI GCTCC 3 cut(s) 45, 87, 667
Lsp1109I GCAGC 4 cut(s) 319, 347, 411, 650
LweI GCATC 1 cut(s) 693
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 264
MalI GATC 4 cut(s) 372, 381, 648, 798
MboI GATC 4 cut(s) 370, 379, 646, 796
MboII GAAGA 3 cut(s) 576, 656, 782
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 3 cut(s) 39, 146, 723
MluCI AATT 5 cut(s) 366, 436, 546, 650, 709
MnlI CCTC 8 cut(s) 99, 102, 308, 337, 438, 475, 619, 658
MroI TCCGGA 1 cut(s) 258
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 2 cut(s) 513, 743
MspI CCGG 2 cut(s) 259, 476
MspR9I CCNGG 2 cut(s) 50, 477
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 7 cut(s) 54, 118, 225, 282, 332, 549, 635
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 2 cut(s) 660, 738
NdeII GATC 4 cut(s) 370, 379, 646, 796
NlaIII CATG 5 cut(s) 106, 403, 664, 691, 742
NlaIV GGNNCC 2 cut(s) 47, 669
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 234, 251, 284, 334, 337, 364, 426, 640
PsiI TTATAA 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 47, 669
PspPI GGNCC 1 cut(s) 240
PstI CTGCAG 2 cut(s) 221, 337
PstNI CAGNNNCTG 1 cut(s) 424
RsaI GTAC 4 cut(s) 13, 319, 493, 749
RsaNI GTAC 4 cut(s) 12, 318, 492, 748
RseI CAYNNNNRTG 2 cut(s) 513, 743
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 8 cut(s) 233, 250, 283, 333, 336, 363, 425, 639
Sau3AI GATC 4 cut(s) 370, 379, 646, 796
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 2 cut(s) 319, 493
ScrFI CCNGG 2 cut(s) 50, 477
SduI GDGCHC 3 cut(s) 39, 146, 723
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 2 cut(s) 217, 333
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 2 cut(s) 513, 743
SmlI CTYRAG 4 cut(s) 299, 405, 523, 538
SmoI CTYRAG 4 cut(s) 299, 405, 523, 538
Sse9I AATT 5 cut(s) 366, 436, 546, 650, 709
SsiI CCGC 5 cut(s) 232, 249, 276, 283, 362
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 48, 475
StyI CCWWGG 5 cut(s) 146, 206, 660, 738, 809
TaaI ACNGT 3 cut(s) 317, 359, 634
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 39
TasI AATT 5 cut(s) 366, 436, 546, 650, 709
TatI WGTACW 3 cut(s) 317, 491, 747
TauI GCSGC 4 cut(s) 235, 252, 285, 365
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 1 cut(s) 364
TseI GCWGC 4 cut(s) 332, 335, 424, 638
TspDTI ATGAA 1 cut(s) 497
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 436
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 2 cut(s) 319, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.