FvH4_3g08330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016090
Physical Location & Seq
Reverse (-)
4869464 .. 4871014
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08330.t1

Sequence Viewer

Length: 330 bp
ATGACAGACCTCAATCCCCCGCCTGAAAAGGCCAAAGCGGCAGCCGAGATCAAAAAGATCCTGTCGGGCGGAAAGGCCCACTTCCCGAACCCGCCCGACCCAACAAACCCGGACCCGGCTACTCTCCGGGAGCAATGGAGATACGCCATTAGGCAGTACAGCAGAATGTACTCTCACGCTTGGGGCACCGCCATTCTCGCCGGAGCTTCCTTCTTTGCCCTCGGCTGGTTCATCAAGGGCGGCAATCCTCTCCCTTCCTTCGGCACCCACCACGATCCTCCTCCTCCGCCTTCCCCGGCCGACAGTACTGATGAGCCTCGCCGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.9

Weight (kDa)

9.1

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 185, 263
AccII CGCG 1 cut(s) 324
AciI CCGC 8 cut(s) 20, 38, 69, 92, 189, 240, 287, 322
AclWI GGATC 2 cut(s) 52, 269
AcoI YGGCCR 1 cut(s) 297
AfaI GTAC 3 cut(s) 158, 170, 307
AfiI CCNNNNNNNGG 3 cut(s) 115, 225, 260
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 2 cut(s) 52, 269
AoxI GGCC 3 cut(s) 30, 75, 297
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 76, 112
AsuC2I CCSGG 4 cut(s) 110, 116, 128, 296
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 185, 263
BbvI GCAGC 1 cut(s) 53
BcnI CCSGG 4 cut(s) 110, 116, 128, 296
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 39, 42, 241, 322
BlsI GCNGC 4 cut(s) 40, 43, 242, 323
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 4 cut(s) 110, 116, 128, 296
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 76, 112
BmiI GGNNCC 3 cut(s) 114, 187, 265
BmrFI CCNGG 4 cut(s) 110, 116, 128, 296
BpuMI CCSGG 4 cut(s) 110, 116, 128, 296
BsaJI CCNNGG 2 cut(s) 220, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 225, 260
Bse3DI GCAATG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 220, 294
BseLI CCNNNNNNNGG 3 cut(s) 115, 225, 260
BseMI GCAATG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 270, 273
BseSI GKGCMC 1 cut(s) 188
BseX3I CGGCCG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 3 cut(s) 32, 77, 299
BshNI GGYRCC 2 cut(s) 185, 263
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 5 cut(s) 110, 116, 127, 201, 296
BslI CCNNNNNNNGG 3 cut(s) 115, 225, 260
BsnI GGCC 3 cut(s) 32, 77, 299
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 3 cut(s) 48, 57, 274
BspACI CCGC 8 cut(s) 20, 38, 69, 92, 189, 240, 287, 322
BspANI GGCC 3 cut(s) 32, 77, 299
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 114, 187, 265
BspPI GGATC 2 cut(s) 52, 269
BspT107I GGYRCC 2 cut(s) 185, 263
BsrDI GCAATG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 220, 294
BssMI GATC 3 cut(s) 48, 57, 274
Bst4CI ACNGT 1 cut(s) 305
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 51, 60, 277
BstMBI GATC 3 cut(s) 48, 57, 274
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 38, 197
BstSCI CCNGG 4 cut(s) 108, 114, 126, 294
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 32, 77, 299
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 76, 112
Csp6I GTAC 3 cut(s) 157, 169, 306
CviAII CATG 1 cut(s) 327
CviJI RGCY 8 cut(s) 32, 44, 77, 119, 206, 225, 299, 316
CviKI_1 RGCY 8 cut(s) 32, 44, 77, 119, 206, 225, 299, 316
CviQI GTAC 3 cut(s) 157, 169, 306
DpnI GATC 3 cut(s) 50, 59, 276
DpnII GATC 3 cut(s) 48, 57, 274
EaeI YGGCCR 1 cut(s) 297
EagI CGGCCG 1 cut(s) 297
EciI GGCGGA 2 cut(s) 84, 276
EclXI CGGCCG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 297
FaeI CATG 1 cut(s) 330
FaiI YATR 1 cut(s) 328
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 1 cut(s) 326
FauI CCCGC 2 cut(s) 27, 99
Fnu4HI GCNGC 4 cut(s) 39, 42, 241, 322
Fsp4HI GCNGC 4 cut(s) 39, 42, 241, 322
GlaI GCGC 1 cut(s) 325
GluI GCNGC 4 cut(s) 39, 42, 241, 322
HaeIII GGCC 3 cut(s) 32, 77, 299
HapII CCGG 5 cut(s) 110, 116, 127, 201, 296
HhaI GCGC 1 cut(s) 326
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HpaII CCGG 5 cut(s) 110, 116, 127, 201, 296
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 4 cut(s) 220, 264, 268, 300
HpyCH4III ACNGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 197
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 48, 57, 274
LmnI GCTCC 2 cut(s) 130, 203
LpnPI CCDG 8 cut(s) 36, 74, 123, 129, 140, 211, 214, 309
Lsp1109I GCAGC 1 cut(s) 53
MalI GATC 3 cut(s) 50, 59, 276
MboI GATC 3 cut(s) 48, 57, 274
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 188
MnlI CCTC 7 cut(s) 20, 230, 258, 288, 291, 294, 327
MspI CCGG 5 cut(s) 110, 116, 127, 201, 296
MspR9I CCNGG 4 cut(s) 110, 116, 128, 296
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 38, 197
NciI CCSGG 4 cut(s) 110, 116, 128, 296
NdeII GATC 3 cut(s) 48, 57, 274
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 3 cut(s) 114, 187, 265
NmeAIII GCCGAG 2 cut(s) 70, 201
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 4 cut(s) 40, 43, 242, 323
PspN4I GGNNCC 3 cut(s) 114, 187, 265
PspPI GGNCC 2 cut(s) 76, 112
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 3 cut(s) 158, 170, 307
RsaNI GTAC 3 cut(s) 157, 169, 306
SatI GCNGC 4 cut(s) 39, 42, 241, 322
Sau3AI GATC 3 cut(s) 48, 57, 274
Sau96I GGNCC 2 cut(s) 76, 112
ScaI AGTACT 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 110, 116, 128, 296
SduI GDGCHC 1 cut(s) 188
SetI ASST 2 cut(s) 12, 208
SinI GGWCC 1 cut(s) 112
SsiI CCGC 8 cut(s) 20, 38, 69, 92, 189, 240, 287, 322
StyD4I CCNGG 4 cut(s) 108, 114, 126, 294
TaaI ACNGT 1 cut(s) 305
TatI WGTACW 3 cut(s) 156, 168, 305
TauI GCSGC 3 cut(s) 41, 243, 324
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.