Prupe.4G055000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016090
Physical Location & Seq
Forward (+)
2649658 .. 2650036
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055000.1

Sequence Viewer

Length: 366 bp
ATGGCTGAACCCAATACACCTCAAAATGTTCCTCCTTCTTCTTCTTCTTCTTCAGATAAAGTTCCAGCTGACATGAAAAATGGCCGCGCCAACAACACCAACAAAAGTTTCTCGGGCCAAAAGATCCACTACCCGAACCCGCCCGATGCGTCAAACCCTGACCCGGCAACGCTCAGAGAGCAATGGAAGTTCGCCATCAGGCAGTATAGCAAATGGTACTCCCACGCCTGGGGCACCGCCATTCTCGCTGGAGTTTCCTTTTTTGCCCTCGGTTGGGTCATCAAGGGCTCCAATCCTCTGCCCTCTTTTGGCCGCCATGACGATTCTCCTCCTCCTCCCGACAAAGCCGATGAAGCTCCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.23

Weight (kDa)

9.0

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccII CGCG 1 cut(s) 87
AciI CCGC 4 cut(s) 85, 140, 237, 313
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 2 cut(s) 82, 310
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 6 cut(s) 163, 228, 229, 273, 274, 308
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 68, 356
AluI AGCT 2 cut(s) 68, 356
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 3 cut(s) 82, 115, 310
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 290
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 164
BisI GCNGC 2 cut(s) 85, 313
BlsI GCNGC 2 cut(s) 86, 314
Bme1390I CCNGG 2 cut(s) 164, 229
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 235, 289
BmrFI CCNGG 2 cut(s) 164, 229
BmsI GCATC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 228, 268
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 228, 229, 273, 274, 308
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 228, 268
BseLI CCNNNNNNNGG 6 cut(s) 163, 228, 229, 273, 274, 308
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 187
BseRI GAGGAG 3 cut(s) 318, 321, 324
BseSI GKGCMC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 3 cut(s) 84, 117, 312
BshNI GGYRCC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 6 cut(s) 163, 228, 229, 273, 274, 308
BsnI GGCC 3 cut(s) 84, 117, 312
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 236, 290
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 4 cut(s) 85, 140, 237, 313
BspANI GGCC 3 cut(s) 84, 117, 312
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 235, 289
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 228, 268
BssMI GATC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 178, 245, 353
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 162, 227
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 3 cut(s) 84, 117, 312
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 73, 317
CviJI RGCY 8 cut(s) 5, 68, 84, 117, 288, 312, 347, 356
CviKI_1 RGCY 8 cut(s) 5, 68, 84, 117, 288, 312, 347, 356
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 2 cut(s) 82, 310
Eco24I GRGCYC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 76, 320
FaiI YATR 3 cut(s) 74, 207, 318
FatI CATG 2 cut(s) 72, 316
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 85, 313
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 85, 313
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 85, 313
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 3 cut(s) 84, 117, 312
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 76, 320
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 323
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 55, 176
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 245, 353
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 76, 320
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 293, 361
LpnPI CCDG 7 cut(s) 78, 171, 177, 184, 214, 234, 241
LweI GCATC 1 cut(s) 136
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 5 cut(s) 30, 33, 36, 39, 42
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 236, 290
MnlI CCTC 8 cut(s) 30, 42, 278, 306, 313, 339, 342, 345
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 164, 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 178, 245, 353
NciI CCSGG 1 cut(s) 164
NdeII GATC 1 cut(s) 123
NlaIII CATG 2 cut(s) 76, 320
NlaIV GGNNCC 2 cut(s) 235, 289
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 86, 314
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 235, 289
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 2 cut(s) 85, 313
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 164, 229
SduI GDGCHC 2 cut(s) 236, 290
SetI ASST 3 cut(s) 22, 70, 358
SfaNI GCATC 1 cut(s) 136
SsiI CCGC 4 cut(s) 85, 140, 237, 313
StyD4I CCNGG 2 cut(s) 162, 227
TauI GCSGC 2 cut(s) 87, 315
TfiI GAWTC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 89, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.