RLG00000031678

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016090
Physical Location & Seq
Forward (+)
7254057 .. 7254821
765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031678

Sequence Viewer

Length: 378 bp
ATGGCAGACCCCAATCCCCCGCCTGAAAACGTTCCTCCACCGTCTTCAGCCAAAGCTGCAACGGAGACCAAAAAATTCTTCTCGGGCGAAAAGGTCCACTTCCCGAACCCGCCCGACCCAACAAACCCGGACCCGGCTACTCTCCGGGAGCAATGGAAATACGCCATCCGGCAGTACAGCAGAATGGCGGCAATCCTCTCCCCTCTTTCGGCACCCACCACGATCCTCCCCCTCCTCCGCCTCCGGCCGACAATACCGATGAGCCTCGCCGCGCGTGAGTGTTCTACTGTTCTAGAGTGCAGATGCCAAAACCGTATGGAGGGCAAGCTGTTCGGGTTGTCAAGACTGATCTTGCTGTTCACAAAGAAAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

9.37

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccII CGCG 2 cut(s) 272, 274
AciI CCGC 5 cut(s) 20, 110, 188, 238, 270
AclI AACGTT 1 cut(s) 30
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 245
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 133, 208, 319
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 2 cut(s) 56, 328
AluI AGCT 2 cut(s) 56, 328
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 94, 130
AsuC2I CCSGG 3 cut(s) 128, 134, 146
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 94, 130
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BcnI CCSGG 3 cut(s) 128, 134, 146
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 293
BisI GCNGC 3 cut(s) 57, 189, 270
BlsI GCNGC 3 cut(s) 58, 190, 271
Bme1390I CCNGG 3 cut(s) 128, 134, 146
Bme18I GGWCC 2 cut(s) 94, 130
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 94, 130
BmiI GGNNCC 2 cut(s) 132, 213
BmrFI CCNGG 3 cut(s) 128, 134, 146
BmsI GCATC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 3 cut(s) 128, 134, 146
BsaI GGTCTC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 208, 319
Bse3DI GCAATG 1 cut(s) 158
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 133, 208, 319
BseMI GCAATG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 2 cut(s) 272, 274
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 5 cut(s) 128, 134, 145, 169, 244
BslI CCNNNNNNNGG 3 cut(s) 133, 208, 319
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 2 cut(s) 222, 348
BspACI CCGC 5 cut(s) 20, 110, 188, 238, 270
BspANI GGCC 1 cut(s) 247
BspFNI CGCG 2 cut(s) 272, 274
BspLI GGNNCC 2 cut(s) 132, 213
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 158
BssMI GATC 2 cut(s) 222, 348
Bst4CI ACNGT 3 cut(s) 42, 289, 314
BstC8I GCNNGC 1 cut(s) 326
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 2 cut(s) 272, 274
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 225, 351
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 222, 348
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 3 cut(s) 126, 132, 144
BstUI CGCG 2 cut(s) 272, 274
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 245
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 326
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 94, 130
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 6 cut(s) 50, 56, 137, 247, 264, 328
CviKI_1 RGCY 6 cut(s) 50, 56, 137, 247, 264, 328
CviQI GTAC 1 cut(s) 175
DpnI GATC 2 cut(s) 224, 350
DpnII GATC 2 cut(s) 222, 348
EaeI YGGCCR 1 cut(s) 245
EagI CGGCCG 1 cut(s) 245
EciI GGCGGA 1 cut(s) 227
EclXI CGGCCG 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 94, 130
Eco52I CGGCCG 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 82
FaiI YATR 1 cut(s) 317
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FauI CCCGC 2 cut(s) 27, 117
Fnu4HI GCNGC 3 cut(s) 57, 189, 270
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 57, 189, 270
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 57, 189, 270
HaeIII GGCC 1 cut(s) 247
HapII CCGG 5 cut(s) 128, 134, 145, 169, 244
HhaI GCGC 1 cut(s) 274
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HpaII CCGG 5 cut(s) 128, 134, 145, 169, 244
Hpy166II GTNNAC 2 cut(s) 97, 360
Hpy188III TCNNGA 3 cut(s) 103, 293, 342
Hpy8I GTNNAC 2 cut(s) 97, 360
HpyCH4III ACNGT 3 cut(s) 42, 289, 314
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 59, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 30
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 222, 348
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 6 cut(s) 36, 141, 147, 158, 182, 257
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 293
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 224, 350
MboI GATC 2 cut(s) 222, 348
MboII GAAGA 2 cut(s) 36, 70
MluCI AATT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 30
MspI CCGG 5 cut(s) 128, 134, 145, 169, 244
MspR9I CCNGG 3 cut(s) 128, 134, 146
MvnI CGCG 2 cut(s) 272, 274
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 3 cut(s) 128, 134, 146
NdeII GATC 2 cut(s) 222, 348
NlaIV GGNNCC 2 cut(s) 132, 213
PdmI GAANNNNTTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 58, 190, 271
Psp1406I AACGTT 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 132, 213
PspPI GGNCC 2 cut(s) 94, 130
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 3 cut(s) 57, 189, 270
Sau3AI GATC 2 cut(s) 222, 348
Sau96I GGNCC 2 cut(s) 94, 130
ScrFI CCNGG 3 cut(s) 128, 134, 146
SetI ASST 4 cut(s) 33, 58, 96, 330
SfaNI GCATC 1 cut(s) 293
SinI GGWCC 2 cut(s) 94, 130
Sse9I AATT 1 cut(s) 74
SsiI CCGC 5 cut(s) 20, 110, 188, 238, 270
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 126, 132, 144
TaaI ACNGT 3 cut(s) 42, 289, 314
TaiI ACGT 1 cut(s) 33
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 191, 272
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 94, 130
XapI RAATTY 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.