Rroxscaffold_1G00066540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016090
Physical Location & Seq
Reverse (-)
88067833 .. 88068180
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066540.1

Sequence Viewer

Length: 348 bp
ATGGCAGACCCCAATCCCCCGCCTGAAAACGCTCCTCCCCCGTCTTCAGCCAAAGCTGCAACCGAGACCAAAAAATTCTTCTCGGGCGAAAAGGTCCACTTCCCGAACCCGCCCGACCCAACAAACCCGGACCCGGCTACTCTCCGGGAGCAATGGAAATACGCCATCCGGCAGTACAGCAGAATGTACTCCCACGCTTGGGGCACCGCCATTCTCGCCGGAGCTTCCTTCTTTGCCCTCGGCTGGTTCATCAAGGGCGGCAATCCTCTCCCCTCTTTCGGCACCCACCACGATCCTCCTCCTCCGCCGCCTCCGGCCGACAATACCGATGAGCCTCGCCGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.57

Weight (kDa)

6.9

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 281
AccII CGCG 1 cut(s) 342
AciI CCGC 7 cut(s) 20, 110, 207, 258, 305, 308, 340
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 176, 188
AfiI CCNNNNNNNGG 5 cut(s) 133, 198, 199, 243, 278
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 2 cut(s) 56, 224
AluI AGCT 2 cut(s) 56, 224
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 94, 130
AsuC2I CCSGG 3 cut(s) 128, 134, 146
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 94, 130
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 2 cut(s) 203, 281
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 173
BcnI CCSGG 3 cut(s) 128, 134, 146
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 4 cut(s) 57, 259, 308, 340
BlsI GCNGC 4 cut(s) 58, 260, 309, 341
Bme1390I CCNGG 3 cut(s) 128, 134, 146
Bme18I GGWCC 2 cut(s) 94, 130
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 94, 130
BmiI GGNNCC 3 cut(s) 132, 205, 283
BmrFI CCNGG 3 cut(s) 128, 134, 146
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 3 cut(s) 128, 134, 146
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 198, 199, 243, 278
Bse3DI GCAATG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 5 cut(s) 133, 198, 199, 243, 278
BseMI GCAATG 1 cut(s) 158
BseRI GAGGAG 3 cut(s) 24, 288, 291
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 315
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 2 cut(s) 203, 281
BsiEI CGRYCG 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 6 cut(s) 128, 134, 145, 169, 219, 314
BslI CCNNNNNNNGG 5 cut(s) 133, 198, 199, 243, 278
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 7 cut(s) 20, 110, 207, 258, 305, 308, 340
BspANI GGCC 1 cut(s) 317
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 132, 205, 283
BspPI GGATC 1 cut(s) 287
BspT107I GGYRCC 2 cut(s) 203, 281
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 56, 215
BstSCI CCNGG 3 cut(s) 126, 132, 144
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 165
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 94, 130
Csp6I GTAC 2 cut(s) 175, 187
CviAII CATG 1 cut(s) 345
CviJI RGCY 7 cut(s) 50, 56, 137, 224, 243, 317, 334
CviKI_1 RGCY 7 cut(s) 50, 56, 137, 224, 243, 317, 334
CviQI GTAC 2 cut(s) 175, 187
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 315
EagI CGGCCG 1 cut(s) 315
EciI GGCGGA 1 cut(s) 294
EclXI CGGCCG 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 94, 130
Eco52I CGGCCG 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 82
FaeI CATG 1 cut(s) 348
FaiI YATR 1 cut(s) 346
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 1 cut(s) 344
FauI CCCGC 2 cut(s) 27, 117
Fnu4HI GCNGC 4 cut(s) 57, 259, 308, 340
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 57, 259, 308, 340
GlaI GCGC 1 cut(s) 343
GluI GCNGC 4 cut(s) 57, 259, 308, 340
HaeIII GGCC 1 cut(s) 317
HapII CCGG 6 cut(s) 128, 134, 145, 169, 219, 314
HhaI GCGC 1 cut(s) 344
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HpaII CCGG 6 cut(s) 128, 134, 145, 169, 219, 314
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 215
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 3 cut(s) 37, 148, 221
LpnPI CCDG 8 cut(s) 36, 141, 147, 158, 182, 229, 232, 327
Lsp1109I GCAGC 1 cut(s) 43
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 36, 70
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 1 cut(s) 74
MnlI CCTC 9 cut(s) 45, 248, 276, 283, 306, 309, 312, 321, 345
MspI CCGG 6 cut(s) 128, 134, 145, 169, 219, 314
MspR9I CCNGG 3 cut(s) 128, 134, 146
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 56, 215
NciI CCSGG 3 cut(s) 128, 134, 146
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 3 cut(s) 132, 205, 283
NmeAIII GCCGAG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 4 cut(s) 58, 260, 309, 341
PspN4I GGNNCC 3 cut(s) 132, 205, 283
PspPI GGNCC 2 cut(s) 94, 130
RsaI GTAC 2 cut(s) 176, 188
RsaNI GTAC 2 cut(s) 175, 187
SatI GCNGC 4 cut(s) 57, 259, 308, 340
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 2 cut(s) 94, 130
ScrFI CCNGG 3 cut(s) 128, 134, 146
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 58, 96, 226
SinI GGWCC 2 cut(s) 94, 130
Sse9I AATT 1 cut(s) 74
SsiI CCGC 7 cut(s) 20, 110, 207, 258, 305, 308, 340
StyD4I CCNGG 3 cut(s) 126, 132, 144
TasI AATT 1 cut(s) 74
TatI WGTACW 2 cut(s) 174, 186
TauI GCSGC 3 cut(s) 261, 310, 342
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 94, 130
XapI RAATTY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.