Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006311.1

Orthogroup ID

OG0016090

Physical Location & Seq

Genomic Coordinates Reverse (-)

5728 .. 6078

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006311.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggcagacccaaatcccccgcctgaaaacgttcctccaccgtcttcagccaaagctgcaaccgagacgaaaaaactcttctcgggcgaaaaggtccacttcccgaacccgcccgacccaacaaacccggacccggctactctccgggagcaatggaaatacgccatccggcagtacagcagaatgtactcccacgcttggggcaccgccattctcgccggagcttccttctttgccctcggctggttcatcaagggcggcaatcctctcccctctttccgcacccaccacgatcctcctcctcctccgccgcctccggccgacaataccgatgagcctcgccgcgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.76

Weight (kDa)

8.08

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28540
fragaria_vesca	FvH4_3g08330
malus_domestica	MD10G1286700.v1.1
prunus_persica	Prupe.4G055000_v2.0.a1
pyrus_communis	pycom10g23950
rosa_chinensis	RchiOBHm_Chr5g0009671
rosa_laevigata	RLG00000031678
rosa_multiflora	Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066540
rosa_rugosa	Rorug04G0444600
rosa_samantha	Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana	Rw5G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	345
AciI	CCGC	8 cut(s)	20, 110, 207, 258, 280, 308, 311, 343
AclI	AACGTT	1 cut(s)	30
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	176, 188
AfiI	CCNNNNNNNGG	4 cut(s)	133, 198, 199, 243
AluBI	AGCT	2 cut(s)	56, 224
AluI	AGCT	2 cut(s)	56, 224
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	94, 130
AsuC2I	CCSGG	3 cut(s)	128, 134, 146
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	94, 130
BaeGI	GKGCMC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	173
BcnI	CCSGG	3 cut(s)	128, 134, 146
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	57, 259, 311, 343
BlsI	GCNGC	4 cut(s)	58, 260, 312, 344
Bme1390I	CCNGG	3 cut(s)	128, 134, 146
Bme18I	GGWCC	2 cut(s)	94, 130
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	94, 130
BmiI	GGNNCC	2 cut(s)	132, 205
BmrFI	CCNGG	3 cut(s)	128, 134, 146
BpiI	GAAGAC	1 cut(s)	36
BpuMI	CCSGG	3 cut(s)	128, 134, 146
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 198, 199, 243
Bse3DI	GCAATG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	4 cut(s)	133, 198, 199, 243
BseMI	GCAATG	1 cut(s)	158
BseRI	GAGGAG	3 cut(s)	288, 291, 294
BseSI	GKGCMC	1 cut(s)	206
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	6 cut(s)	128, 134, 145, 169, 219, 317
BslI	CCNNNNNNNGG	4 cut(s)	133, 198, 199, 243
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	8 cut(s)	20, 110, 207, 258, 280, 308, 311, 343
BspANI	GGCC	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	132, 205
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	292
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 215
BstSCI	CCNGG	3 cut(s)	126, 132, 144
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	36
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	94, 130
Csp6I	GTAC	2 cut(s)	175, 187
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	7 cut(s)	50, 56, 137, 224, 243, 320, 337
CviKI_1	RGCY	7 cut(s)	50, 56, 137, 224, 243, 320, 337
CviQI	GTAC	2 cut(s)	175, 187
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	94, 130
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	351
FaiI	YATR	1 cut(s)	349
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	1 cut(s)	347
FauI	CCCGC	2 cut(s)	27, 117
Fnu4HI	GCNGC	4 cut(s)	57, 259, 311, 343
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	57, 259, 311, 343
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	4 cut(s)	57, 259, 311, 343
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	6 cut(s)	128, 134, 145, 169, 219, 317
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HpaII	CCGG	6 cut(s)	128, 134, 145, 169, 219, 317
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 215
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	148, 221
LpnPI	CCDG	8 cut(s)	36, 141, 147, 158, 182, 229, 232, 330
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	36, 70
MhlI	GDGCHC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	30
MspI	CCGG	6 cut(s)	128, 134, 145, 169, 219, 317
MspR9I	CCNGG	3 cut(s)	128, 134, 146
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	56, 215
NciI	CCSGG	3 cut(s)	128, 134, 146
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	2 cut(s)	132, 205
NmeAIII	GCCGAG	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	58, 260, 312, 344
Psp1406I	AACGTT	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	132, 205
PspPI	GGNCC	2 cut(s)	94, 130
RsaI	GTAC	2 cut(s)	176, 188
RsaNI	GTAC	2 cut(s)	175, 187
SatI	GCNGC	4 cut(s)	57, 259, 311, 343
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	2 cut(s)	94, 130
ScrFI	CCNGG	3 cut(s)	128, 134, 146
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	4 cut(s)	33, 58, 96, 226
SinI	GGWCC	2 cut(s)	94, 130
SsiI	CCGC	8 cut(s)	20, 110, 207, 258, 280, 308, 311, 343
StyD4I	CCNGG	3 cut(s)	126, 132, 144
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	33
TatI	WGTACW	2 cut(s)	174, 186
TauI	GCSGC	3 cut(s)	261, 313, 345
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	94, 130
XmnI	GAANNNNTTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.