Rmu_sc0038062.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038062.1
OG0016090
Physical Location & Seq
Reverse (-)
709 .. 1053
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038062.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
atggcagacccaaatcccccgcctgaaaacgttcctccaccgtcttcagccaaagctgcaaccgagacgaaaaaactcttctcgggcgaaaaggtccacttcccgaacccgcccgacccaacaaacccggacccggctactctccgggagcaatggaaatacgccatccggcagtacagcagaatgtactcccacgcttggggcaccgccattctcgccggagcttccttctttgccctcggctggttcatcaagggcggcaatcctctcccctctttccacacccaccacgatcctcctccgccgcctccggccgacaataccgatgagcctggccgcgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

6.49

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 1 cut(s) 339
AciI CCGC 7 cut(s) 20, 110, 207, 258, 302, 305, 337
AclI AACGTT 1 cut(s) 30
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 2 cut(s) 312, 334
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 176, 188
AfiI CCNNNNNNNGG 4 cut(s) 133, 198, 199, 243
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 56, 224
AluI AGCT 2 cut(s) 56, 224
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 312, 334
ApeKI GCWGC 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 94, 130
AsuC2I CCSGG 3 cut(s) 128, 134, 146
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 94, 130
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 3 cut(s) 128, 134, 146
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 4 cut(s) 57, 259, 305, 337
BlsI GCNGC 4 cut(s) 58, 260, 306, 338
Bme1390I CCNGG 4 cut(s) 128, 134, 146, 333
Bme18I GGWCC 2 cut(s) 94, 130
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 94, 130
BmiI GGNNCC 2 cut(s) 132, 205
BmrFI CCNGG 4 cut(s) 128, 134, 146, 333
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 3 cut(s) 128, 134, 146
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 198, 199, 243
Bse3DI GCAATG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 4 cut(s) 133, 198, 199, 243
BseMI GCAATG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 314, 336
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 6 cut(s) 128, 134, 145, 169, 219, 311
BslI CCNNNNNNNGG 4 cut(s) 133, 198, 199, 243
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 314, 336
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 7 cut(s) 20, 110, 207, 258, 302, 305, 337
BspANI GGCC 2 cut(s) 314, 336
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 132, 205
BspPI GGATC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 56, 215
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 4 cut(s) 126, 132, 144, 331
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 2 cut(s) 314, 336
BtsCI GGATG 1 cut(s) 165
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 94, 130
Csp6I GTAC 2 cut(s) 175, 187
CviAII CATG 1 cut(s) 342
CviJI RGCY 8 cut(s) 50, 56, 137, 224, 243, 314, 331, 336
CviKI_1 RGCY 8 cut(s) 50, 56, 137, 224, 243, 314, 331, 336
CviQI GTAC 2 cut(s) 175, 187
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 312, 334
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 291
EclXI CGGCCG 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 94, 130
Eco52I CGGCCG 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 345
FaiI YATR 1 cut(s) 343
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 1 cut(s) 341
FauI CCCGC 2 cut(s) 27, 117
Fnu4HI GCNGC 4 cut(s) 57, 259, 305, 337
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 57, 259, 305, 337
GlaI GCGC 1 cut(s) 340
GluI GCNGC 4 cut(s) 57, 259, 305, 337
HaeIII GGCC 2 cut(s) 314, 336
HapII CCGG 6 cut(s) 128, 134, 145, 169, 219, 311
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HpaII CCGG 6 cut(s) 128, 134, 145, 169, 219, 311
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 215
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 148, 221
LpnPI CCDG 9 cut(s) 36, 141, 147, 158, 182, 229, 232, 318, 324
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 36, 70
MhlI GDGCHC 1 cut(s) 206
MnlI CCTC 7 cut(s) 45, 248, 276, 283, 306, 309, 318
MroXI GAANNNNTTC 1 cut(s) 30
MspI CCGG 6 cut(s) 128, 134, 145, 169, 219, 311
MspR9I CCNGG 4 cut(s) 128, 134, 146, 333
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 56, 215
NciI CCSGG 3 cut(s) 128, 134, 146
NdeII GATC 1 cut(s) 292
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 132, 205
NmeAIII GCCGAG 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 4 cut(s) 58, 260, 306, 338
Psp1406I AACGTT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 132, 205
PspPI GGNCC 2 cut(s) 94, 130
RsaI GTAC 2 cut(s) 176, 188
RsaNI GTAC 2 cut(s) 175, 187
SatI GCNGC 4 cut(s) 57, 259, 305, 337
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 2 cut(s) 94, 130
ScrFI CCNGG 4 cut(s) 128, 134, 146, 333
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 33, 58, 96, 226
SinI GGWCC 2 cut(s) 94, 130
SsiI CCGC 7 cut(s) 20, 110, 207, 258, 302, 305, 337
StyD4I CCNGG 4 cut(s) 126, 132, 144, 331
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 33
TatI WGTACW 2 cut(s) 174, 186
TauI GCSGC 3 cut(s) 261, 307, 339
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 94, 130
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.