FvH4_3g08460

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
4939693 .. 4943238
3546 bp
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UTR
Exon/CDS
Intron
FvH4_3g08460.t1

Sequence Viewer

Length: 1608 bp
ATGAGCCGAAGGACTTCTGCTATAGCTAGCTTAGAGAGAGATATGGCTGGAGAGGAAGTGAGTAGTGAAAGTACCTCACTTGAATCAACACCAACATGGGCTGTCGCCACCGTCTGCTTCGTCTTGATTTTCATCTCCATTATCATCGAGCATTTGCTTCATGTCTTAGCCAAGTATTTCAACAAAATAAGGAGGAAGTCACTCATTCTCGCTCTTGACAAGATCAAAAAAGAGTTGATGTTGCTGGGGTTCATTTCTTTGCTGCTAACCGTGGGGCAAAAGCCGATTGCCAACATCTGCATCCCTAAATCCGCCGGAGAGTCATTTCTTCCTTGCCAGAGCTACACCTTGAGTGAAGATATTGTTGAGGAAACCAAATGTGCTGAGCAAGGAAAGGTCTCATTGATGTCGAGGTCCGGTGCGAATGAGCTCCAATACTTCATTTTTGTGCTCGCAATGTTCCATGTCATGTCTTGCTTTCTCACTTCCGCTCTTGGTATGGCCAAGATGAAGAGCTGGCAGTCTTGGGAGGCAGAAACCAGAACCATGGAGTATCAATTTTCTTATGATCCAAGGAGATTTCAGCTGGCACACCAAACCTCATTTGGGAAGCGACATTTGAAATGTTGGAGTGATCACAGAATACTCCGTTGGCCGGCCTGTTTTGCAAGGCAATTCTTCAGTTCTGTTTCCAAAGTGGATTATTTCACTCTTCGACACGGATTCATAGCGGCTCATTTTGCAGAAGGGAGCAATTTTGACTTCCACAAATATATCAGAAGGGCTTTGGAGAAAGATTATGGTGTAGTTATGAGTACAAGCTGGTGGATTTGGATGTACTCAGTCTTCATCATATTCTTGAATGCACATGGATTTTACAATTATCTATGGGTACCATTCATTCCTTTAGTGATGCTATTGCTTGTGGGAACAAAGCTACAAGGCATCATAACTAAGATGTGTGTAGATAGCCATGATAAATCTCATGTTGTAAGAGGAACTTTGCTTGTGAAGCCCAGTGACCACTTTTTCTGGTTTGGCTGGCCTAAATTGCTTCTTCATATTTTGCACTTCATACTGTATCAGAACTCATTTCAATTGGCATTCTTCACATGGACTTGGTACAAATTTGGTTTAAAATCATGCTTCCACAGAGAAACAGAGGATATAGTAATTCGCCTAGCCATGGGTATCATGGTACAAATCCTCTGTGGCTATGTAACTCTTCCTCTTTACGCATTGGTCACTCAGATGGGTACGTCGATGAGAAAAGCTGTCTTCACCGAGACGGTGGTTACCGGACTGAAAAAATGGAGAGCTAGAGCCAGGAAGAACCTTGCTCTTAAGAGCTCGGCACGAATGTCGTTGGATGCTTCCCTTCAAACCTCACTCTCACTAGACACTACACTTTCTTTCAGTCACATTGATGCTTCGGCTTCTTTCTCCACCGTGGATTACGACGCTGAATACGTAGCACTAGAAATAATCGACAATGCCGGAAATGTTGTACATGACAAACAAGTTCCGGAGGCAGAGGATCGGAACCAGAAGCCGGGCTCATCCTTTGATGGCTTTGATTTGAGTAGAAGTAGAAAATCTCAAACATGA

Protein Analysis

536

Amino Acids

61.33

Weight (kDa)

9.1

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 25 - 116 7.8e-38 Mlo family
Mlo PF03094 123 - 463 5.8e-147 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 892
AccB1I GGYRCC 1 cut(s) 892
AccBSI CCGCTC 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 1525
AciI CCGC 3 cut(s) 312, 489, 731
AclWI GGATC 2 cut(s) 563, 1545
AcoI YGGCCR 2 cut(s) 501, 653
AcsI RAATTY 1 cut(s) 1127
AcuI CTGAAG 1 cut(s) 664
AfaI GTAC 8 cut(s) 73, 817, 839, 894, 1124, 1200, 1258, 1509
AfiI CCNNNNNNNGG 4 cut(s) 606, 655, 1186, 1552
AflII CTTAAG 1 cut(s) 1343
AgsI TTSAA 6 cut(s) 83, 181, 622, 862, 1097, 1382
AjnI CCWGG 1 cut(s) 1325
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
Alw21I GWGCWC 3 cut(s) 432, 453, 1352
Alw26I GTCTC 2 cut(s) 403, 1280
AlwI GGATC 2 cut(s) 563, 1545
Aor13HI TCCGGA 1 cut(s) 1525
AoxI GGCC 4 cut(s) 501, 653, 657, 1043
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 1127
Asp700I GAANNNNTTC 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 1554
AsuHPI GGTGA 1 cut(s) 1273
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 414
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 1 cut(s) 892
BanII GRGCYC 3 cut(s) 432, 1352, 1559
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
BbsI GAAGAC 2 cut(s) 838, 1270
Bbv12I GWGCWC 3 cut(s) 432, 453, 1352
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 1246, 1562
BcgI CGANNNNNNTGC 2 cut(s) 1344, 1378
BciT130I CCWGG 1 cut(s) 1327
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 1 cut(s) 1554
BcoDI GTCTC 2 cut(s) 403, 1280
BfaI CTAG 5 cut(s) 27, 1181, 1320, 1397, 1478
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 1343
BisI GCNGC 2 cut(s) 263, 732
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 2 cut(s) 264, 733
Bme1390I CCNGG 2 cut(s) 1327, 1554
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 894, 1544
BmrFI CCNGG 2 cut(s) 1327, 1554
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 5 cut(s) 309, 903, 954, 1360, 1417
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 1011
BpiI GAAGAC 2 cut(s) 838, 1270
BpmI CTGGAG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 1554
BsaAI YACGTR 1 cut(s) 1471
BsaBI GATNNNNATC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 5 cut(s) 270, 546, 572, 1185, 1449
BsaWI WCCGGW 3 cut(s) 416, 1298, 1525
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 4 cut(s) 606, 655, 1186, 1552
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 1017
Bse3DI GCAATG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 1525
BseBI CCWGG 1 cut(s) 1327
BseDI CCNNGG 5 cut(s) 270, 546, 572, 1185, 1449
BseGI GGATG 4 cut(s) 300, 840, 1375, 1559
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 4 cut(s) 606, 655, 1186, 1552
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 375, 855, 1262
BseNI ACTGG 1 cut(s) 1017
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 4 cut(s) 503, 655, 659, 1045
BshNI GGYRCC 1 cut(s) 892
BsiHKAI GWGCWC 3 cut(s) 432, 453, 1352
BsiSI CCGG 7 cut(s) 315, 417, 656, 1299, 1497, 1526, 1553
BslI CCNNNNNNNGG 4 cut(s) 606, 655, 1186, 1552
BsmAI GTCTC 2 cut(s) 403, 1280
BsmBI CGTCTC 1 cut(s) 1280
BsmI GAATGC 2 cut(s) 868, 1103
BsnI GGCC 4 cut(s) 503, 655, 659, 1045
Bso31I GGTCTC 1 cut(s) 403
Bsp1286I GDGCHC 4 cut(s) 432, 453, 1352, 1559
Bsp13I TCCGGA 1 cut(s) 1525
Bsp1407I TGTACA 1 cut(s) 1507
Bsp143I GATC 4 cut(s) 222, 568, 634, 1537
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp19I CCATGG 2 cut(s) 546, 1185
BspACI CCGC 3 cut(s) 312, 489, 731
BspANI GGCC 4 cut(s) 503, 655, 659, 1045
BspCNI CTCAG 3 cut(s) 376, 854, 1261
BspEI TCCGGA 1 cut(s) 1525
BspLI GGNNCC 2 cut(s) 894, 1544
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 563, 1545
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 892
BspTI CTTAAG 1 cut(s) 1343
BspTNI GGTCTC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 655
BsrGI TGTACA 1 cut(s) 1507
BsrI ACTGG 1 cut(s) 1017
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 5 cut(s) 270, 546, 572, 1185, 1449
BssMI GATC 4 cut(s) 222, 568, 634, 1537
BssT1I CCWWGG 3 cut(s) 546, 572, 1185
Bst2UI CCWGG 1 cut(s) 1327
Bst4CI ACNGT 5 cut(s) 112, 271, 1080, 1291, 1450
Bst6I CTCTTC 3 cut(s) 506, 717, 1230
BstAFI CTTAAG 1 cut(s) 1343
BstAUI TGTACA 1 cut(s) 1507
BstBAI YACGTR 1 cut(s) 1471
BstC8I GCNNGC 6 cut(s) 28, 453, 518, 588, 657, 1043
BstDEI CTNAG 6 cut(s) 31, 166, 384, 841, 954, 1248
BstDSI CCRYGG 4 cut(s) 270, 546, 1185, 1449
BstEII GGTNACC 1 cut(s) 1294
BstF5I GGATG 4 cut(s) 300, 840, 1375, 1559
BstKTI GATC 4 cut(s) 225, 571, 637, 1540
BstMAI GTCTC 2 cut(s) 403, 1280
BstMBI GATC 4 cut(s) 222, 568, 634, 1537
BstMWI GCNNNNNNNGC 4 cut(s) 665, 740, 1012, 1051
BstNI CCWGG 1 cut(s) 1327
BstPI GGTNACC 1 cut(s) 1294
BstSCI CCNGG 2 cut(s) 1325, 1552
BstSFI CTRYAG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 1471
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 2 cut(s) 838, 1270
BstXI CCANNNNNNTGG 1 cut(s) 547
BsuRI GGCC 4 cut(s) 503, 655, 659, 1045
BtgI CCRYGG 4 cut(s) 270, 546, 1185, 1449
BtsCI GGATG 4 cut(s) 300, 840, 1375, 1559
BtsIMutI CAGTG 1 cut(s) 1024
Cac8I GCNNGC 6 cut(s) 28, 453, 518, 588, 657, 1043
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 1469
Csp6I GTAC 8 cut(s) 72, 816, 838, 893, 1123, 1199, 1257, 1508
CviQI GTAC 8 cut(s) 72, 816, 838, 893, 1123, 1199, 1257, 1508
DdeI CTNAG 6 cut(s) 31, 166, 384, 841, 954, 1248
DpnI GATC 4 cut(s) 224, 570, 636, 1539
DpnII GATC 4 cut(s) 222, 568, 634, 1537
DraI TTTAAA 1 cut(s) 1137
EaeI YGGCCR 2 cut(s) 501, 653
Eam1104I CTCTTC 3 cut(s) 506, 717, 1230
EarI CTCTTC 3 cut(s) 506, 717, 1230
EciI GGCGGA 1 cut(s) 301
Ecl136II GAGCTC 2 cut(s) 430, 1350
Eco105I TACGTA 1 cut(s) 1471
Eco130I CCWWGG 3 cut(s) 546, 572, 1185
Eco24I GRGCYC 3 cut(s) 432, 1352, 1559
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 2 cut(s) 430, 1350
Eco57I CTGAAG 1 cut(s) 664
Eco91I GGTNACC 1 cut(s) 1294
EcoICRI GAGCTC 2 cut(s) 430, 1350
EcoO65I GGTNACC 1 cut(s) 1294
EcoRII CCWGG 1 cut(s) 1325
EcoT14I CCWWGG 3 cut(s) 546, 572, 1185
EcoT38I GRGCYC 3 cut(s) 432, 1352, 1559
ErhI CCWWGG 3 cut(s) 546, 572, 1185
Esp3I CGTCTC 1 cut(s) 1280
FalI AAGNNNNNCTT 2 cut(s) 985, 1017
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 2 cut(s) 263, 732
FokI GGATG 4 cut(s) 287, 847, 1382, 1546
FriOI GRGCYC 3 cut(s) 432, 1352, 1559
FseI GGCCGGCC 1 cut(s) 659
Fsp4HI GCNGC 2 cut(s) 263, 732
FspBI CTAG 5 cut(s) 27, 1181, 1320, 1397, 1478
GluI GCNGC 2 cut(s) 263, 732
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 4 cut(s) 503, 655, 659, 1045
HapII CCGG 7 cut(s) 315, 417, 656, 1299, 1497, 1526, 1553
HgaI GACGC 1 cut(s) 1469
HinfI GANTC 3 cut(s) 83, 320, 723
HpaII CCGG 7 cut(s) 315, 417, 656, 1299, 1497, 1526, 1553
HphI GGTGA 1 cut(s) 1273
Hpy188I TCNGA 4 cut(s) 779, 1086, 1251, 1542
Hpy188III TCNNGA 4 cut(s) 124, 215, 859, 1526
Hpy99I CGWCG 2 cut(s) 1264, 1463
HpyAV CCTTC 4 cut(s) 3, 740, 774, 1388
HpyCH4III ACNGT 5 cut(s) 112, 271, 1080, 1291, 1450
HpyCH4IV ACGT 2 cut(s) 1259, 1470
HpyCH4V TGCA 5 cut(s) 300, 668, 743, 866, 1069
HpyF10VI GCNNNNNNNGC 4 cut(s) 665, 740, 1012, 1051
HpyF3I CTNAG 6 cut(s) 31, 166, 384, 841, 954, 1248
HpySE526I ACGT 2 cut(s) 1259, 1470
Kpn2I TCCGGA 1 cut(s) 1525
KpnI GGTACC 1 cut(s) 896
KroI GCCGGC 1 cut(s) 655
KroNI GCCGGC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 4 cut(s) 222, 568, 634, 1537
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 2 cut(s) 435, 750
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 5 cut(s) 309, 903, 954, 1360, 1417
MaeI CTAG 5 cut(s) 27, 1181, 1320, 1397, 1478
MaeII ACGT 2 cut(s) 1259, 1470
MaeIII GTNAC 6 cut(s) 198, 1019, 1219, 1243, 1294, 1418
MalI GATC 4 cut(s) 224, 570, 636, 1539
MbiI CCGCTC 1 cut(s) 491
MboI GATC 4 cut(s) 222, 568, 634, 1537
MfeI CAATTG 1 cut(s) 1097
MhlI GDGCHC 4 cut(s) 432, 453, 1352, 1559
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 8 cut(s) 557, 674, 754, 880, 1049, 1097, 1127, 1173
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 608, 1347
Mox20I TGGCCA 1 cut(s) 503
MroI TCCGGA 1 cut(s) 1525
MroNI GCCGGC 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 13
MscI TGGCCA 1 cut(s) 503
MseI TTAA 2 cut(s) 1136, 1344
MslI CAYNNNNRTG 4 cut(s) 94, 446, 1250, 1425
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 1343
MspI CCGG 7 cut(s) 315, 417, 656, 1299, 1497, 1526, 1553
MspR9I CCNGG 2 cut(s) 1327, 1554
MunI CAATTG 1 cut(s) 1097
Mva1269I GAATGC 2 cut(s) 868, 1103
MvaI CCWGG 1 cut(s) 1327
MwoI GCNNNNNNNGC 4 cut(s) 665, 740, 1012, 1051
NaeI GCCGGC 1 cut(s) 657
NciI CCSGG 1 cut(s) 1554
NcoI CCATGG 2 cut(s) 546, 1185
NdeII GATC 4 cut(s) 222, 568, 634, 1537
NgoMIV GCCGGC 1 cut(s) 655
NheI GCTAGC 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 894, 1544
NmeAIII GCCGAG 1 cut(s) 1331
NmuCI GTSAC 4 cut(s) 198, 1019, 1243, 1418
PciSI GCTCTTC 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 1467
PctI GAATGC 2 cut(s) 868, 1103
PdiI GCCGGC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 83, 723
PkrI GCNGC 2 cut(s) 264, 733
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Ppu21I YACGTR 1 cut(s) 1471
Psp124BI GAGCTC 2 cut(s) 432, 1352
Psp6I CCWGG 1 cut(s) 1325
PspEI GGTNACC 1 cut(s) 1294
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 1325
PspN4I GGNNCC 2 cut(s) 894, 1544
PspPI GGNCC 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 586
RigI GGCCGGCC 1 cut(s) 659
RsaI GTAC 8 cut(s) 73, 817, 839, 894, 1124, 1200, 1258, 1509
RsaNI GTAC 8 cut(s) 72, 816, 838, 893, 1123, 1199, 1257, 1508
RseI CAYNNNNRTG 4 cut(s) 94, 446, 1250, 1425
SacI GAGCTC 2 cut(s) 432, 1352
SapI GCTCTTC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 1136, 1344
SatI GCNGC 2 cut(s) 263, 732
Sau3AI GATC 4 cut(s) 222, 568, 634, 1537
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 1327, 1554
SduI GDGCHC 4 cut(s) 432, 453, 1352, 1559
SfaNI GCATC 5 cut(s) 309, 903, 954, 1360, 1417
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 4 cut(s) 94, 446, 1250, 1425
SmlI CTYRAG 2 cut(s) 349, 1343
SmoI CTYRAG 2 cut(s) 349, 1343
SnaBI TACGTA 1 cut(s) 1471
Sse9I AATT 8 cut(s) 557, 674, 754, 880, 1049, 1097, 1127, 1173
SsiI CCGC 3 cut(s) 312, 489, 731
SspMI CTAG 5 cut(s) 27, 1181, 1320, 1397, 1478
SstI GAGCTC 2 cut(s) 432, 1352
StyD4I CCNGG 2 cut(s) 1325, 1552
StyI CCWWGG 3 cut(s) 546, 572, 1185
TaaI ACNGT 5 cut(s) 112, 271, 1080, 1291, 1450
TaiI ACGT 2 cut(s) 1262, 1473
TaqI TCGA 5 cut(s) 147, 410, 715, 1262, 1488
TasI AATT 8 cut(s) 557, 674, 754, 880, 1049, 1097, 1127, 1173
TatI WGTACW 3 cut(s) 815, 837, 1507
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 2 cut(s) 83, 723
Tru1I TTAA 2 cut(s) 1136, 1344
Tru9I TTAA 2 cut(s) 1136, 1344
TscAI CASTG 1 cut(s) 1024
TseFI GTSAC 4 cut(s) 198, 1019, 1243, 1418
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 4 cut(s) 198, 1019, 1243, 1418
TspGWI ACGGA 2 cut(s) 638, 735
TspRI CASTG 1 cut(s) 1024
Vha464I CTTAAG 1 cut(s) 1343
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 1127
XcmI CCANNNNNNNNNTGG 2 cut(s) 602, 1192
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 5 cut(s) 27, 1181, 1320, 1397, 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.