Rh5AG073000

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
6242867 .. 6246379
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG073000.1

Sequence Viewer

Length: 1569 bp
ATGGCCGGAGAGGAAGTCAGTAGTGAAAGCACCACACTTGAATCAACACCAACATGGGCTGTCGCCACCGTCTGCTTCGTTTTGATTTTCATCTCCATTCTCATCGAGCATTTGCTTCATCTTTTAGCCCATTATTTCAACAAAATAAGGAGGAAGTCTCTCATTCTCGCTCTTGATAAGATCAAATCAGAGTTGATGTTGCTGGGGTTCATTTCTTTGCTGCTAACCGTGGGGCAAAAGCCGATTGCCAACATCTGCATCCCGAAATCTGCCGGAGAGTCTTTTCTTCCTTGCCAGAGCTACACCTTGAGTGAAGATATTGTGGAGGAAACGAAATGTGCAGAGCAGGGAAAGGTTTCATTGATGTCGAGGTCCGGTGCCAATGAGCTTCAATACTTTATTTTTGTGCTCGCACTGTTCCACGTCTTGTCTTGCGTTCTCACTTCCACCTTTGGTTTTGCCAAGATGAAGAGCTGGCAGTCTTGGGAGGCAGAAACCAGAACCATGGAGTATCAATTTTCTTATGATCCAAGGAGATTTCAGCTGGCACACCAAACCTCATTTGGGAAGAGACATTTGAAATGTTGGAGTGACCACAGAATACTCCGTTGGCCGGCCTGTTTTGCAAGGCAATTCTTCAGTTCTGTTTCGAAAGTGGATTATTTCACTCTTCGACACGGATTCATAACGGCTCATTTTGCAGAAGGAAGCAATTTTGACTTCCACAAATATATCAGAAGGGCTTTGGAGAAAGATTATGGAGTAGTTATGACTACAAGCTGGTGGATTTGGATGTACTCAGTCTTCGTCATATTCTTGAATGCACATGGATTTTATAATTATCTATGGGTACCGTTCATTCCTTTAGTGATGCTATTGCTTGTGGGAACAAAGCTACAAGGCATCATAACTAAGATGTGTGTAGATAGCCATGAAAAATCTCATGTTGTAAGAGGGACTTTGCTTGTGAAGCCCAGTGACCACTTTTTCTGGTTTGGCTGGCCCAAATTGCTTCTCCATATTTTGCACTTCATTCTGTATCAGAATTCATTTCAATTGGCATTCTTCACTTGGACTTGGTACAAATTTGGTTTGAAATCATGCTTCCACCGAGAAACTGAGGATATAGTAATACGGCTGGCCATGGGTATCATGGTACAAATCCTGTGTGGCTATGTAACTCTACCTCTTTACGCATTGGTCACTCAGATGGGTACGTCGATGAGAAAAGCTGTCTTCACCGAGACGGTGGTTACCGGACTGAAAAAATGGAGAGGAAGAGCCAGGAAGAACCTTGCTCTTAAGAGCTCGGCACGAATGTCGTTGGATGCTTCTCTTCAAACCTCACTCTCACTAGACACTACACTTTCTTTCAATCACATTGATGCTTCGGCTTCTTTCTCCACCGTGGATTTCGACGCTGAATATGTAGCAGTAGAAATAATGGACAATATTGGAAATGTTGTACAGGGAAAACAAGTACAGGAGGCGGAGGATGATCGAGACCAGAAGCCTGGACCATCATTTGATGGTTTTGATTTGAGTAGAAGTAAAAAATCTCAAAGATGA

Protein Analysis

522

Amino Acids

59.95

Weight (kDa)

8.91

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 11 - 103 1.1e-37 Mlo family
Mlo PF03094 109 - 441 8.2e-146 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 850
AccB1I GGYRCC 2 cut(s) 377, 850
AciI CCGC 1 cut(s) 1490
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 3 cut(s) 3, 611, 1140
AcsI RAATTY 2 cut(s) 1045, 1085
AcuI CTGAAG 1 cut(s) 622
AfaI GTAC 7 cut(s) 797, 852, 1082, 1158, 1216, 1467, 1482
AfiI CCNNNNNNNGG 2 cut(s) 564, 613
AflII CTTAAG 1 cut(s) 1301
AgsI TTSAA 9 cut(s) 41, 139, 392, 580, 820, 1055, 1096, 1340, 1375
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 1283, 1513
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 8 cut(s) 300, 388, 474, 544, 780, 895, 1232, 1308
AluI AGCT 8 cut(s) 300, 388, 474, 544, 780, 895, 1232, 1308
Alw21I GWGCWC 2 cut(s) 411, 1310
Alw26I GTCTC 4 cut(s) 162, 565, 1238, 1497
AlwI GGATC 1 cut(s) 521
AoxI GGCC 5 cut(s) 3, 611, 615, 1001, 1140
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 1045, 1085
Asp700I GAANNNNTTC 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 850
AspS9I GGNCC 3 cut(s) 372, 1002, 1517
AsuHPI GGTGA 1 cut(s) 1231
AsuII TTCGAA 1 cut(s) 650
AvaII GGWCC 2 cut(s) 372, 1517
BalI TGGCCA 1 cut(s) 1142
BanI GGYRCC 2 cut(s) 377, 850
BanII GRGCYC 1 cut(s) 1310
BarI GAAGNNNNNNTAC 2 cut(s) 788, 820
BbsI GAAGAC 2 cut(s) 796, 1228
Bbv12I GWGCWC 2 cut(s) 411, 1310
BbvI GCAGC 1 cut(s) 207
BccI CCATC 3 cut(s) 1204, 1523, 1528
BceAI ACGGC 2 cut(s) 705, 1151
BcgI CGANNNNNNTGC 2 cut(s) 1302, 1336
BciT130I CCWGG 2 cut(s) 1285, 1515
BcoDI GTCTC 4 cut(s) 162, 565, 1238, 1497
BfaI CTAG 1 cut(s) 1355
BfrI CTTAAG 1 cut(s) 1301
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 1285, 1515
Bme18I GGWCC 2 cut(s) 372, 1517
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 372, 1002, 1517
BmiI GGNNCC 2 cut(s) 379, 852
BmrFI CCNGG 2 cut(s) 1285, 1515
BmrI ACTGGG 1 cut(s) 969
BmsI GCATC 5 cut(s) 267, 861, 912, 1318, 1375
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 796, 1228
BplI GAGNNNNNCTC 2 cut(s) 142, 174
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 1497
BsaJI CCNNGG 5 cut(s) 228, 504, 530, 1143, 1407
BsaWI WCCGGW 2 cut(s) 374, 1256
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 564, 613
Bse118I RCCGGY 1 cut(s) 613
Bse1I ACTGG 1 cut(s) 975
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 1285, 1515
BseDI CCNNGG 5 cut(s) 228, 504, 530, 1143, 1407
BseGI GGATG 4 cut(s) 258, 798, 1333, 1501
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 564, 613
BseMII CTCAG 3 cut(s) 813, 1110, 1220
BseNI ACTGG 1 cut(s) 975
BseXI GCAGC 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 5 cut(s) 5, 613, 617, 1003, 1142
BshNI GGYRCC 2 cut(s) 377, 850
BsiHKAI GWGCWC 2 cut(s) 411, 1310
BsiSI CCGG 5 cut(s) 6, 273, 375, 614, 1257
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 564, 613
BsmAI GTCTC 4 cut(s) 162, 565, 1238, 1497
BsmBI CGTCTC 1 cut(s) 1238
BsmFI GGGAC 1 cut(s) 970
BsmI GAATGC 2 cut(s) 826, 1061
BsnI GGCC 5 cut(s) 5, 613, 617, 1003, 1142
Bso31I GGTCTC 1 cut(s) 1497
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 411, 1310
Bsp1407I TGTACA 1 cut(s) 1465
Bsp143I GATC 3 cut(s) 180, 526, 1498
Bsp19I CCATGG 2 cut(s) 504, 1143
BspACI CCGC 1 cut(s) 1490
BspANI GGCC 5 cut(s) 5, 613, 617, 1003, 1142
BspCNI CTCAG 3 cut(s) 812, 1111, 1219
BspLI GGNNCC 2 cut(s) 379, 852
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 2 cut(s) 464, 1273
BspT104I TTCGAA 1 cut(s) 650
BspT107I GGYRCC 2 cut(s) 377, 850
BspTI CTTAAG 1 cut(s) 1301
BspTNI GGTCTC 1 cut(s) 1497
BsrFI RCCGGY 1 cut(s) 613
BsrGI TGTACA 1 cut(s) 1465
BsrI ACTGG 1 cut(s) 975
BssAI RCCGGY 1 cut(s) 613
BssECI CCNNGG 5 cut(s) 228, 504, 530, 1143, 1407
BssMI GATC 3 cut(s) 180, 526, 1498
BssT1I CCWWGG 3 cut(s) 504, 530, 1143
Bst2UI CCWGG 2 cut(s) 1285, 1515
Bst4CI ACNGT 6 cut(s) 70, 229, 417, 855, 1249, 1408
Bst6I CTCTTC 5 cut(s) 464, 563, 675, 1273, 1341
BstAFI CTTAAG 1 cut(s) 1301
BstAUI TGTACA 1 cut(s) 1465
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 6 cut(s) 411, 476, 546, 615, 1001, 1140
BstDEI CTNAG 4 cut(s) 799, 912, 1119, 1206
BstDSI CCRYGG 4 cut(s) 228, 504, 1143, 1407
BstEII GGTNACC 1 cut(s) 1252
BstF5I GGATG 4 cut(s) 258, 798, 1333, 1501
BstKTI GATC 3 cut(s) 183, 529, 1501
BstMAI GTCTC 4 cut(s) 162, 565, 1238, 1497
BstMBI GATC 3 cut(s) 180, 526, 1498
BstMWI GCNNNNNNNGC 4 cut(s) 623, 698, 970, 1009
BstNI CCWGG 2 cut(s) 1285, 1515
BstPI GGTNACC 1 cut(s) 1252
BstSCI CCNGG 2 cut(s) 1283, 1513
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 796, 1228
BstXI CCANNNNNNTGG 2 cut(s) 505, 1514
BsuRI GGCC 5 cut(s) 5, 613, 617, 1003, 1142
BtgI CCRYGG 4 cut(s) 228, 504, 1143, 1407
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 4 cut(s) 258, 798, 1333, 1501
BtsIMutI CAGTG 2 cut(s) 413, 982
Cac8I GCNNGC 6 cut(s) 411, 476, 546, 615, 1001, 1140
Cfr10I RCCGGY 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 372, 1002, 1517
CseI GACGC 1 cut(s) 1427
Csp6I GTAC 7 cut(s) 796, 851, 1081, 1157, 1215, 1466, 1481
CviAII CATG 8 cut(s) 54, 505, 827, 932, 944, 1101, 1144, 1153
CviQI GTAC 7 cut(s) 796, 851, 1081, 1157, 1215, 1466, 1481
DdeI CTNAG 4 cut(s) 799, 912, 1119, 1206
DpnI GATC 3 cut(s) 182, 528, 1500
DpnII GATC 3 cut(s) 180, 526, 1498
EaeI YGGCCR 3 cut(s) 3, 611, 1140
Eam1104I CTCTTC 5 cut(s) 464, 563, 675, 1273, 1341
EarI CTCTTC 5 cut(s) 464, 563, 675, 1273, 1341
EciI GGCGGA 1 cut(s) 1505
Ecl136II GAGCTC 1 cut(s) 1308
Eco130I CCWWGG 3 cut(s) 504, 530, 1143
Eco24I GRGCYC 1 cut(s) 1310
Eco31I GGTCTC 1 cut(s) 1497
Eco47I GGWCC 2 cut(s) 372, 1517
Eco53kI GAGCTC 1 cut(s) 1308
Eco57I CTGAAG 1 cut(s) 622
Eco91I GGTNACC 1 cut(s) 1252
EcoICRI GAGCTC 1 cut(s) 1308
EcoO65I GGTNACC 1 cut(s) 1252
EcoRI GAATTC 1 cut(s) 1045
EcoRII CCWGG 2 cut(s) 1283, 1513
EcoT14I CCWWGG 3 cut(s) 504, 530, 1143
EcoT38I GRGCYC 1 cut(s) 1310
ErhI CCWWGG 3 cut(s) 504, 530, 1143
Esp3I CGTCTC 1 cut(s) 1238
FaeI CATG 8 cut(s) 57, 508, 830, 935, 947, 1104, 1147, 1156
FalI AAGNNNNNCTT 2 cut(s) 943, 975
FaqI GGGAC 1 cut(s) 970
FatI CATG 8 cut(s) 53, 504, 826, 931, 943, 1100, 1143, 1152
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 4 cut(s) 245, 805, 1340, 1508
FriOI GRGCYC 1 cut(s) 1310
FseI GGCCGGCC 1 cut(s) 617
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 1355
GluI GCNGC 1 cut(s) 221
GsaI CCCAGC 1 cut(s) 206
HaeIII GGCC 5 cut(s) 5, 613, 617, 1003, 1142
HapII CCGG 5 cut(s) 6, 273, 375, 614, 1257
HgaI GACGC 1 cut(s) 1427
Hin1II CATG 8 cut(s) 57, 508, 830, 935, 947, 1104, 1147, 1156
HinfI GANTC 3 cut(s) 41, 278, 681
HpaII CCGG 5 cut(s) 6, 273, 375, 614, 1257
HphI GGTGA 1 cut(s) 1231
Hpy188I TCNGA 4 cut(s) 190, 737, 1044, 1209
Hpy188III TCNNGA 4 cut(s) 173, 262, 817, 1502
Hpy99I CGWCG 2 cut(s) 1222, 1421
HpyAV CCTTC 2 cut(s) 698, 732
HpyCH4III ACNGT 6 cut(s) 70, 229, 417, 855, 1249, 1408
HpyCH4IV ACGT 2 cut(s) 423, 1217
HpyCH4V TGCA 6 cut(s) 258, 341, 626, 701, 824, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 623, 698, 970, 1009
HpyF3I CTNAG 4 cut(s) 799, 912, 1119, 1206
HpySE526I ACGT 2 cut(s) 423, 1217
Hsp92II CATG 8 cut(s) 57, 508, 830, 935, 947, 1104, 1147, 1156
KpnI GGTACC 1 cut(s) 854
KroI GCCGGC 1 cut(s) 613
KroNI GCCGGC 1 cut(s) 615
Kzo9I GATC 3 cut(s) 180, 526, 1498
LguI GCTCTTC 2 cut(s) 464, 1273
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 5 cut(s) 267, 861, 912, 1318, 1375
MaeI CTAG 1 cut(s) 1355
MaeII ACGT 2 cut(s) 423, 1217
MaeIII GTNAC 5 cut(s) 590, 977, 1177, 1201, 1252
MalI GATC 3 cut(s) 182, 528, 1500
MboI GATC 3 cut(s) 180, 526, 1498
MfeI CAATTG 1 cut(s) 1055
MhlI GDGCHC 2 cut(s) 411, 1310
MlsI TGGCCA 1 cut(s) 1142
MluCI AATT 8 cut(s) 515, 632, 712, 838, 1007, 1045, 1055, 1085
MluNI TGGCCA 1 cut(s) 1142
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 566, 1305
Mox20I TGGCCA 1 cut(s) 1142
MroNI GCCGGC 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 355
MscI TGGCCA 1 cut(s) 1142
MseI TTAA 1 cut(s) 1302
MslI CAYNNNNRTG 3 cut(s) 52, 1208, 1383
Msp20I TGGCCA 1 cut(s) 1142
MspA1I CMGCKG 1 cut(s) 544
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 5 cut(s) 6, 273, 375, 614, 1257
MspR9I CCNGG 2 cut(s) 1285, 1515
MunI CAATTG 1 cut(s) 1055
Mva1269I GAATGC 2 cut(s) 826, 1061
MvaI CCWGG 2 cut(s) 1285, 1515
MwoI GCNNNNNNNGC 4 cut(s) 623, 698, 970, 1009
NaeI GCCGGC 1 cut(s) 615
NcoI CCATGG 2 cut(s) 504, 1143
NdeII GATC 3 cut(s) 180, 526, 1498
NgoMIV GCCGGC 1 cut(s) 613
NlaIII CATG 8 cut(s) 57, 508, 830, 935, 947, 1104, 1147, 1156
NlaIV GGNNCC 2 cut(s) 379, 852
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 3 cut(s) 590, 977, 1201
NspV TTCGAA 1 cut(s) 650
PciSI GCTCTTC 2 cut(s) 464, 1273
PctI GAATGC 2 cut(s) 826, 1061
PdiI GCCGGC 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 41, 681
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 1310
Psp6I CCWGG 2 cut(s) 1283, 1513
PspEI GGTNACC 1 cut(s) 1252
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 1283, 1513
PspN4I GGNNCC 2 cut(s) 379, 852
PspPI GGNCC 3 cut(s) 372, 1002, 1517
PvuII CAGCTG 1 cut(s) 544
RigI GGCCGGCC 1 cut(s) 617
RsaI GTAC 7 cut(s) 797, 852, 1082, 1158, 1216, 1467, 1482
RsaNI GTAC 7 cut(s) 796, 851, 1081, 1157, 1215, 1466, 1481
RseI CAYNNNNRTG 3 cut(s) 52, 1208, 1383
SacI GAGCTC 1 cut(s) 1310
SapI GCTCTTC 2 cut(s) 464, 1273
SaqAI TTAA 1 cut(s) 1302
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 3 cut(s) 180, 526, 1498
Sau96I GGNCC 3 cut(s) 372, 1002, 1517
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 1285, 1515
SduI GDGCHC 2 cut(s) 411, 1310
SfaNI GCATC 5 cut(s) 267, 861, 912, 1318, 1375
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 2 cut(s) 372, 1517
SmiMI CAYNNNNRTG 3 cut(s) 52, 1208, 1383
SmlI CTYRAG 2 cut(s) 307, 1301
SmoI CTYRAG 2 cut(s) 307, 1301
Sse9I AATT 8 cut(s) 515, 632, 712, 838, 1007, 1045, 1055, 1085
SsiI CCGC 1 cut(s) 1490
SspI AATATT 1 cut(s) 1453
SspMI CTAG 1 cut(s) 1355
SstI GAGCTC 1 cut(s) 1310
StyD4I CCNGG 2 cut(s) 1283, 1513
StyI CCWWGG 3 cut(s) 504, 530, 1143
TaaI ACNGT 6 cut(s) 70, 229, 417, 855, 1249, 1408
TaiI ACGT 2 cut(s) 426, 1220
TaqI TCGA 7 cut(s) 105, 368, 650, 673, 1220, 1416, 1501
TasI AATT 8 cut(s) 515, 632, 712, 838, 1007, 1045, 1055, 1085
TatI WGTACW 3 cut(s) 795, 1465, 1480
TfiI GAWTC 2 cut(s) 41, 681
Tru1I TTAA 1 cut(s) 1302
Tru9I TTAA 1 cut(s) 1302
TscAI CASTG 2 cut(s) 420, 982
TseFI GTSAC 3 cut(s) 590, 977, 1201
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 3 cut(s) 590, 977, 1201
TspGWI ACGGA 2 cut(s) 596, 693
TspRI CASTG 2 cut(s) 420, 982
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 2 cut(s) 372, 1517
XapI RAATTY 2 cut(s) 1045, 1085
XcmI CCANNNNNNNNNTGG 2 cut(s) 560, 1150
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 1 cut(s) 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.