Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011539

Physical Location & Seq

Genomic Coordinates Reverse (-)

5664337 .. 5668182

Gene Structure 3846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG069400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCCGGAGAGGAAGTCAGTAGTGAAAGCACCACACTTGAATCAACACCAACATGGGCAGTCGCCACCGTCTGCTTCGTTTTGATTTTCATCTCCATTCTCATCGAGCATTTGCTTCATCTTTTAGCCCATTATTTCAACAAGATAAGGAGGAAGTCTCTCATTCTCGCTCTTGATAAGATCAAATCAGAGTTGATGTTGCTGGGGTTCATTTCTTTGCTGCTAACCGTGGGGCAAAAGCCGATTGCCAACATCTGCATCCCGAAAGCTGCCGGAGAGTCTTTTCTTCCTTGCCAGAGCTACACCTTGAGTGAAGATATTGTGGAGGAAACGAAATGTGCAGAGCAGGGAAAGGTTTCATTGATGTCGAGGTCCGGTGCCAATGAGCTTCAATACTTTATTTTTGTGCTCGCACTGTTCCACGTCTTGTCTTGCGTTCTCACTTCCACTCTTGGTTTTGCCAAGATGAAGAGCTGGCAGTCTTGGGAGGCAGAAACCAGAACCATGGAGTATCAATTTTCTTATGATCCAAGGAGATTTCAGCTGGCACACCAAACCTCATTTGGGAAGAGACATTTGAAATGTTGGAGTGACCACAGAATACTCCGTTGGCCGGCCTGTTTTGCAAGGCAGTTCTTCAGTTCTGTTTCCAAAGTGGATTATTTCACTCTTCGACACGGATTCATAACGGCTCATTTTGCAGAAGGAAGCAATTTTGACTTCCACAAATATATCAGAAGGGCTTTGGAGAAAGATTATGGAGTAGTTATGACTACAAGCTGGTGGATTTGGATGTACTCAGTCTTCGTCATATTCTTGAATGCACATGGATTTTATAATTATCTATGGGTACCGTTCATTCCTTTAGTGATGCTATTGCTTGTGGGAACAAAGCTACAAGGCATCATAACTAAGATGTGTGTAGATAGCCATGATAAATCTCATGTTGTAAGAGGGACTTTGCTTGTGAAGCCCAGTGACCACTTTTTCTGGTTTGGCTGGCCCAAATTGCTTCTCCATATTTTGCACTTCATACTGTATCAGGTATTGATTCTTCTAATATACCTAGCTTATTTCAATTTCAAAATAAAAATTATGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0043207 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

368

Amino Acids

42.7

Weight (kDa)

9.06

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	11 - 103	1.2e-37	Mlo family
Mlo	PF03094	109 - 365	1.2e-101	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08460 FvH4_3g08460 FvH4_3g08460
malus_domestica	MD10G1288000.v1.1
prunus_persica	Prupe.4G053700_v2.0.a1 Prupe.4G053700_v2.0.a1
pyrus_communis	pycom10g24100
rosa_chinensis	RchiOBHm_Chr5g0009371
rosa_laevigata	RLG00000031656
rosa_multiflora	Rmu_sc0002711.1_g000020
rosa_roxburghii	Rroxscaffold_1G00066720 Rroxscaffold_1G00067420
rosa_rugosa	Rorug04G0442100 Rorug04G0442200 Rorug04G0442300
rosa_samantha	Rh5AG073000 Rh5BG069400 Rh5CG081800 Rh5DG069600
rosa_wichuraiana	Rw5G006820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
Acc65I	GGTACC	1 cut(s)	850
AccB1I	GGYRCC	2 cut(s)	377, 850
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	2 cut(s)	3, 611
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	2 cut(s)	797, 852
AfiI	CCNNNNNNNGG	2 cut(s)	564, 613
AgsI	TTSAA	7 cut(s)	41, 139, 392, 580, 820, 1078, 1084
AjiI	CACGTC	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AluBI	AGCT	8 cut(s)	269, 300, 388, 474, 544, 780, 895, 1070
AluI	AGCT	8 cut(s)	269, 300, 388, 474, 544, 780, 895, 1070
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	162, 565
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	5 cut(s)	3, 611, 615, 1001, 1101
ApeKI	GCWGC	2 cut(s)	220, 269
Asp700I	GAANNNNTTC	1 cut(s)	355
Asp718I	GGTACC	1 cut(s)	850
AspS9I	GGNCC	2 cut(s)	372, 1002
AvaII	GGWCC	1 cut(s)	372
BanI	GGYRCC	2 cut(s)	377, 850
BarI	GAAGNNNNNNTAC	4 cut(s)	788, 820, 1038, 1070
BbsI	GAAGAC	1 cut(s)	796
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	207, 256
BceAI	ACGGC	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	162, 565
BfaI	CTAG	1 cut(s)	1067
BisI	GCNGC	2 cut(s)	221, 270
BlsI	GCNGC	2 cut(s)	222, 271
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	372, 1002
BmiI	GGNNCC	2 cut(s)	379, 852
BmrI	ACTGGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	267, 861, 912
BmuI	ACTGGG	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	796
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	228, 504, 530
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 613
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	975
Bse8I	GATNNNNATC	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	228, 504, 530
BseGI	GGATG	2 cut(s)	258, 798
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	564, 613
BseMII	CTCAG	1 cut(s)	813
BseNI	ACTGG	1 cut(s)	975
BseXI	GCAGC	2 cut(s)	207, 256
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	5, 613, 617, 1003, 1103
BshNI	GGYRCC	2 cut(s)	377, 850
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	4 cut(s)	6, 273, 375, 614
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	2 cut(s)	564, 613
BsmAI	GTCTC	2 cut(s)	162, 565
BsmFI	GGGAC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	5 cut(s)	5, 613, 617, 1003, 1103
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	180, 526
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	5 cut(s)	5, 613, 617, 1003, 1103
BspCNI	CTCAG	1 cut(s)	812
BspLI	GGNNCC	2 cut(s)	379, 852
BspPI	GGATC	1 cut(s)	521
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	2 cut(s)	377, 850
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	975
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	228, 504, 530
BssMI	GATC	2 cut(s)	180, 526
BssT1I	CCWWGG	2 cut(s)	504, 530
Bst4CI	ACNGT	5 cut(s)	70, 229, 417, 855, 1038
Bst6I	CTCTTC	3 cut(s)	464, 563, 675
BstC8I	GCNNGC	5 cut(s)	411, 476, 546, 615, 1001
BstDEI	CTNAG	2 cut(s)	799, 912
BstDSI	CCRYGG	2 cut(s)	228, 504
BstF5I	GGATG	2 cut(s)	258, 798
BstKTI	GATC	2 cut(s)	183, 529
BstMAI	GTCTC	2 cut(s)	162, 565
BstMBI	GATC	2 cut(s)	180, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	623, 698, 970, 1009
BstV1I	GCAGC	2 cut(s)	207, 256
BstV2I	GAAGAC	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuRI	GGCC	5 cut(s)	5, 613, 617, 1003, 1103
BtgI	CCRYGG	2 cut(s)	228, 504
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	258, 798
BtsIMutI	CAGTG	2 cut(s)	413, 982
Cac8I	GCNNGC	5 cut(s)	411, 476, 546, 615, 1001
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	372, 1002
Csp6I	GTAC	2 cut(s)	796, 851
CviAII	CATG	5 cut(s)	54, 505, 827, 932, 944
CviQI	GTAC	2 cut(s)	796, 851
DdeI	CTNAG	2 cut(s)	799, 912
DpnI	GATC	2 cut(s)	182, 528
DpnII	GATC	2 cut(s)	180, 526
EaeI	YGGCCR	2 cut(s)	3, 611
Eam1104I	CTCTTC	3 cut(s)	464, 563, 675
EarI	CTCTTC	3 cut(s)	464, 563, 675
Eco130I	CCWWGG	2 cut(s)	504, 530
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	504, 530
ErhI	CCWWGG	2 cut(s)	504, 530
FaeI	CATG	5 cut(s)	57, 508, 830, 935, 947
FalI	AAGNNNNNCTT	2 cut(s)	943, 975
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	5 cut(s)	53, 504, 826, 931, 943
Fnu4HI	GCNGC	2 cut(s)	221, 270
FokI	GGATG	2 cut(s)	245, 805
FseI	GGCCGGCC	1 cut(s)	617
Fsp4HI	GCNGC	2 cut(s)	221, 270
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	2 cut(s)	221, 270
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	5 cut(s)	5, 613, 617, 1003, 1103
HapII	CCGG	4 cut(s)	6, 273, 375, 614
Hin1II	CATG	5 cut(s)	57, 508, 830, 935, 947
HinfI	GANTC	4 cut(s)	41, 278, 681, 1051
HpaII	CCGG	4 cut(s)	6, 273, 375, 614
Hpy188I	TCNGA	2 cut(s)	190, 737
Hpy188III	TCNNGA	3 cut(s)	173, 262, 817
HpyAV	CCTTC	2 cut(s)	698, 732
HpyCH4III	ACNGT	5 cut(s)	70, 229, 417, 855, 1038
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	6 cut(s)	258, 341, 626, 701, 824, 1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	623, 698, 970, 1009
HpyF3I	CTNAG	2 cut(s)	799, 912
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	57, 508, 830, 935, 947
KpnI	GGTACC	1 cut(s)	854
KroI	GCCGGC	1 cut(s)	613
KroNI	GCCGGC	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	180, 526
LguI	GCTCTTC	1 cut(s)	464
Lsp1109I	GCAGC	2 cut(s)	207, 256
LweI	GCATC	3 cut(s)	267, 861, 912
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	590, 977
MalI	GATC	2 cut(s)	182, 528
MboI	GATC	2 cut(s)	180, 526
MboII	GAAGA	8 cut(s)	278, 326, 481, 580, 628, 662, 796, 1046
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	6 cut(s)	515, 712, 838, 1007, 1078, 1092
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	7 cut(s)	4, 144, 319, 363, 481, 568, 947
MroNI	GCCGGC	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	355
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	4 cut(s)	6, 273, 375, 614
Mva1269I	GAATGC	1 cut(s)	826
MwoI	GCNNNNNNNGC	4 cut(s)	623, 698, 970, 1009
NaeI	GCCGGC	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	180, 526
NgoMIV	GCCGGC	1 cut(s)	613
NlaIII	CATG	5 cut(s)	57, 508, 830, 935, 947
NlaIV	GGNNCC	2 cut(s)	379, 852
NmuCI	GTSAC	2 cut(s)	590, 977
PciSI	GCTCTTC	1 cut(s)	464
PctI	GAATGC	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	41, 681, 1051
PkrI	GCNGC	2 cut(s)	222, 271
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	837
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	379, 852
PspPI	GGNCC	2 cut(s)	372, 1002
PvuII	CAGCTG	1 cut(s)	544
RigI	GGCCGGCC	1 cut(s)	617
RsaI	GTAC	2 cut(s)	797, 852
RsaNI	GTAC	2 cut(s)	796, 851
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	464
SatI	GCNGC	2 cut(s)	221, 270
Sau3AI	GATC	2 cut(s)	180, 526
Sau96I	GGNCC	2 cut(s)	372, 1002
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	3 cut(s)	267, 861, 912
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	6 cut(s)	515, 712, 838, 1007, 1078, 1092
SspMI	CTAG	1 cut(s)	1067
StyI	CCWWGG	2 cut(s)	504, 530
TaaI	ACNGT	5 cut(s)	70, 229, 417, 855, 1038
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	105, 368, 673
TasI	AATT	6 cut(s)	515, 712, 838, 1007, 1078, 1092
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	41, 681, 1051
TscAI	CASTG	2 cut(s)	420, 982
TseFI	GTSAC	2 cut(s)	590, 977
TseI	GCWGC	2 cut(s)	220, 269
Tsp45I	GTSAC	2 cut(s)	590, 977
TspDTI	ATGAA	8 cut(s)	79, 107, 199, 348, 482, 673, 847, 1021
TspGWI	ACGGA	2 cut(s)	596, 693
TspRI	CASTG	2 cut(s)	420, 982
VpaK11BI	GGWCC	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.