Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011539

Physical Location & Seq

Genomic Coordinates Reverse (-)

6038734 .. 6041790

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG069600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTTGCTGGGGTTCATTTCTTTGCTGCTAACCGTGGGGCAAAAGCCGATTGCCAACATCTGCATCCCGAAATCTGCCGGAGAGTCTTTTCTTCCTTGCCAGAGCTACACCTTGAGTGAAGATATTGTGGAGGAAACGAAATGTGCAGAGCAGGGAAAGGTTTCATTGATGTCGAGGTCCGGTGCCAATGAGCTTCAATACTTTATTTTTGTGCTCGCACTGTTCCACGTCTTGTCTTGCGTTCTCACTTCCACCTTTGGTTTTGCCAAGATGAAGAGCTGGCAGTCTTGGGAGGCAGAAACCAGAACCATGGAGTATCAATTTTCTTATGATCCAAGGAGATTTCAGCTGGCACACCAAACCTCATTTGGGAAGAGACATTTGAAATGTTGGAGTGACCACAGAATACTCCGTTGGCCGGCCTGTTTTGCAAGGCAATTCTTCAGTTCTGTTTCCAAAGTGGATTATTTCACTCTTCGACACGGATTCATAACGGCTCATTTTGCAGAAGGAAGCAATTTTGACTTCCACAAATATATCAGAAGGGCTTTGGAGAAAGATTATGGAGTAGTTATGACTACAAGCTGGTGGATTTGGATGTACTCAGTCTTCGTCATATTCTTGAATGCACATGGATTTTATAATTATCTATGGGTACCGTTCATTCCTTTAGTGATGCTATTGCTTGTGGGAACAAAGCTACAAGGCATCATAACTAAGATGTGTGTAGATAGCCATGATAAATCTCATGTTGTAAGAGGGACTTTGCTTGTGAAGCCCAGTGACCACTTTTTCTGGTTTGGCTGGCCCAAATTGCTTCTCCATATTTTGCACTTCATACTGTATCAGAATTCATTTCAATTGGCATTCTTCACTTGGACTTGGTACAAATTTGGTTTGAAATCATGCTTTCACCGAGAAACTGAGGATATAGTAATACGGCTGGCCATGGGTATCATGGTACAAATCCTGTGTGGCTATGTAACTCTACCTCTTTACGCATTGGTCACTCAGATGGGTACGTCGATGAGAAAAGCTGTCTTCACCGAGACGGTGGTTACCGGACTGAAAAAATGGAGAGGAAGAGCCAGGAAGAACCTTGCTCTTAAGAGCTCGGCACGAATGTCGTTGGATGCTTCTCTTCAAACCTCACTCTCACTAGACACTACACTTTCTTTCAATCACATTGATGCTTCGGCTTCTTTCTCCACCGTGGATTTCGACGCTGAATATGTAGCAGTAGAAATAATGGACAATGCTGGAAATGTTGTACAGGGAAAACAAGTACAGGAGGCGGAGGATCGAGACCAGAAGCCTGGACCATCATTTGATGGTTTTGATTTGAGTGGAAGTAAAAAATCTCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0043207 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

456

Amino Acids

52.36

Weight (kDa)

9.05

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	1 - 37	2.7e-10	Mlo family
Mlo	PF03094	44 - 376	5.1e-146	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08460 FvH4_3g08460 FvH4_3g08460
malus_domestica	MD10G1288000.v1.1
prunus_persica	Prupe.4G053700_v2.0.a1 Prupe.4G053700_v2.0.a1
pyrus_communis	pycom10g24100
rosa_chinensis	RchiOBHm_Chr5g0009371
rosa_laevigata	RLG00000031656
rosa_multiflora	Rmu_sc0002711.1_g000020
rosa_roxburghii	Rroxscaffold_1G00066720 Rroxscaffold_1G00067420
rosa_rugosa	Rorug04G0442100 Rorug04G0442200 Rorug04G0442300
rosa_samantha	Rh5AG073000 Rh5BG069400 Rh5CG081800 Rh5DG069600
rosa_wichuraiana	Rw5G006820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
Acc65I	GGTACC	1 cut(s)	655
AccB1I	GGYRCC	2 cut(s)	182, 655
AciI	CCGC	1 cut(s)	1295
AclWI	GGATC	2 cut(s)	326, 1308
AcoI	YGGCCR	2 cut(s)	416, 945
AcsI	RAATTY	2 cut(s)	850, 890
AcuI	CTGAAG	1 cut(s)	427
AfaI	GTAC	7 cut(s)	602, 657, 887, 963, 1021, 1272, 1287
AfiI	CCNNNNNNNGG	2 cut(s)	369, 418
AflII	CTTAAG	1 cut(s)	1106
AgsI	TTSAA	7 cut(s)	197, 385, 625, 860, 901, 1145, 1180
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	1088, 1315
AjuI	GAANNNNNNNTTGG	2 cut(s)	397, 429
AluBI	AGCT	8 cut(s)	105, 193, 279, 349, 585, 700, 1037, 1113
AluI	AGCT	8 cut(s)	105, 193, 279, 349, 585, 700, 1037, 1113
Alw21I	GWGCWC	2 cut(s)	216, 1115
Alw26I	GTCTC	3 cut(s)	370, 1043, 1299
AlwI	GGATC	2 cut(s)	326, 1308
AoxI	GGCC	4 cut(s)	416, 420, 806, 945
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	850, 890
Asp700I	GAANNNNTTC	1 cut(s)	160
Asp718I	GGTACC	1 cut(s)	655
AspS9I	GGNCC	3 cut(s)	177, 807, 1319
AsuHPI	GGTGA	2 cut(s)	905, 1036
AvaII	GGWCC	2 cut(s)	177, 1319
BalI	TGGCCA	1 cut(s)	947
BanI	GGYRCC	2 cut(s)	182, 655
BanII	GRGCYC	1 cut(s)	1115
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbsI	GAAGAC	2 cut(s)	601, 1033
Bbv12I	GWGCWC	2 cut(s)	216, 1115
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	3 cut(s)	1009, 1325, 1330
BceAI	ACGGC	2 cut(s)	510, 956
BcgI	CGANNNNNNTGC	2 cut(s)	1107, 1141
BciT130I	CCWGG	2 cut(s)	1090, 1317
BcoDI	GTCTC	3 cut(s)	370, 1043, 1299
BfaI	CTAG	1 cut(s)	1160
BfrI	CTTAAG	1 cut(s)	1106
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	1090, 1317
Bme18I	GGWCC	2 cut(s)	177, 1319
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	177, 807, 1319
BmiI	GGNNCC	2 cut(s)	184, 657
BmrFI	CCNGG	2 cut(s)	1090, 1317
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	5 cut(s)	72, 666, 717, 1123, 1180
BmuI	ACTGGG	1 cut(s)	774
BpiI	GAAGAC	2 cut(s)	601, 1033
BpuEI	CTTGAG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	1299
BsaJI	CCNNGG	5 cut(s)	33, 309, 335, 948, 1212
BsaWI	WCCGGW	2 cut(s)	179, 1061
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 418
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	1090, 1317
BseDI	CCNNGG	5 cut(s)	33, 309, 335, 948, 1212
BseGI	GGATG	3 cut(s)	63, 603, 1138
BseLI	CCNNNNNNNGG	2 cut(s)	369, 418
BseMII	CTCAG	3 cut(s)	618, 915, 1025
BseNI	ACTGG	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	7
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	418, 422, 808, 947
BshNI	GGYRCC	2 cut(s)	182, 655
BsiHKAI	GWGCWC	2 cut(s)	216, 1115
BsiSI	CCGG	4 cut(s)	78, 180, 419, 1062
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	369, 418
BsmAI	GTCTC	3 cut(s)	370, 1043, 1299
BsmBI	CGTCTC	1 cut(s)	1043
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	2 cut(s)	631, 866
BsnI	GGCC	4 cut(s)	418, 422, 808, 947
Bso31I	GGTCTC	1 cut(s)	1299
Bsp1286I	GDGCHC	2 cut(s)	216, 1115
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	2 cut(s)	331, 1300
Bsp19I	CCATGG	2 cut(s)	309, 948
BspACI	CCGC	1 cut(s)	1295
BspANI	GGCC	4 cut(s)	418, 422, 808, 947
BspCNI	CTCAG	3 cut(s)	617, 916, 1024
BspLI	GGNNCC	2 cut(s)	184, 657
BspPI	GGATC	2 cut(s)	326, 1308
BspQI	GCTCTTC	2 cut(s)	269, 1078
BspT107I	GGYRCC	2 cut(s)	182, 655
BspTI	CTTAAG	1 cut(s)	1106
BspTNI	GGTCTC	1 cut(s)	1299
BsrFI	RCCGGY	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	1 cut(s)	780
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	5 cut(s)	33, 309, 335, 948, 1212
BssMI	GATC	2 cut(s)	331, 1300
BssT1I	CCWWGG	3 cut(s)	309, 335, 948
Bst2UI	CCWGG	2 cut(s)	1090, 1317
Bst4CI	ACNGT	6 cut(s)	34, 222, 660, 843, 1054, 1213
Bst6I	CTCTTC	5 cut(s)	269, 368, 480, 1078, 1146
BstAFI	CTTAAG	1 cut(s)	1106
BstAUI	TGTACA	1 cut(s)	1270
BstC8I	GCNNGC	6 cut(s)	216, 281, 351, 420, 806, 945
BstDEI	CTNAG	4 cut(s)	604, 717, 924, 1011
BstDSI	CCRYGG	4 cut(s)	33, 309, 948, 1212
BstEII	GGTNACC	1 cut(s)	1057
BstF5I	GGATG	3 cut(s)	63, 603, 1138
BstKTI	GATC	2 cut(s)	334, 1303
BstMAI	GTCTC	3 cut(s)	370, 1043, 1299
BstMBI	GATC	2 cut(s)	331, 1300
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 503, 775, 814
BstNI	CCWGG	2 cut(s)	1090, 1317
BstPI	GGTNACC	1 cut(s)	1057
BstSCI	CCNGG	2 cut(s)	1088, 1315
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	2 cut(s)	601, 1033
BstXI	CCANNNNNNTGG	2 cut(s)	310, 1316
BsuRI	GGCC	4 cut(s)	418, 422, 808, 947
BtgI	CCRYGG	4 cut(s)	33, 309, 948, 1212
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	63, 603, 1138
BtsIMutI	CAGTG	2 cut(s)	218, 787
Cac8I	GCNNGC	6 cut(s)	216, 281, 351, 420, 806, 945
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	177, 807, 1319
CseI	GACGC	1 cut(s)	1232
Csp6I	GTAC	7 cut(s)	601, 656, 886, 962, 1020, 1271, 1286
CviAII	CATG	7 cut(s)	310, 632, 737, 749, 906, 949, 958
CviQI	GTAC	7 cut(s)	601, 656, 886, 962, 1020, 1271, 1286
DdeI	CTNAG	4 cut(s)	604, 717, 924, 1011
DpnI	GATC	2 cut(s)	333, 1302
DpnII	GATC	2 cut(s)	331, 1300
EaeI	YGGCCR	2 cut(s)	416, 945
Eam1104I	CTCTTC	5 cut(s)	269, 368, 480, 1078, 1146
EarI	CTCTTC	5 cut(s)	269, 368, 480, 1078, 1146
EciI	GGCGGA	1 cut(s)	1310
Ecl136II	GAGCTC	1 cut(s)	1113
Eco130I	CCWWGG	3 cut(s)	309, 335, 948
Eco24I	GRGCYC	1 cut(s)	1115
Eco31I	GGTCTC	1 cut(s)	1299
Eco47I	GGWCC	2 cut(s)	177, 1319
Eco53kI	GAGCTC	1 cut(s)	1113
Eco57I	CTGAAG	1 cut(s)	427
Eco91I	GGTNACC	1 cut(s)	1057
EcoICRI	GAGCTC	1 cut(s)	1113
EcoO65I	GGTNACC	1 cut(s)	1057
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	1088, 1315
EcoT14I	CCWWGG	3 cut(s)	309, 335, 948
EcoT38I	GRGCYC	1 cut(s)	1115
ErhI	CCWWGG	3 cut(s)	309, 335, 948
Esp3I	CGTCTC	1 cut(s)	1043
FaeI	CATG	7 cut(s)	313, 635, 740, 752, 909, 952, 961
FalI	AAGNNNNNCTT	2 cut(s)	748, 780
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	7 cut(s)	309, 631, 736, 748, 905, 948, 957
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	3 cut(s)	50, 610, 1145
FriOI	GRGCYC	1 cut(s)	1115
FseI	GGCCGGCC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	1160
GluI	GCNGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	418, 422, 808, 947
HapII	CCGG	4 cut(s)	78, 180, 419, 1062
HgaI	GACGC	1 cut(s)	1232
Hin1II	CATG	7 cut(s)	313, 635, 740, 752, 909, 952, 961
HinfI	GANTC	2 cut(s)	83, 486
HpaII	CCGG	4 cut(s)	78, 180, 419, 1062
HphI	GGTGA	2 cut(s)	905, 1036
Hpy188I	TCNGA	3 cut(s)	542, 849, 1014
Hpy188III	TCNNGA	3 cut(s)	67, 622, 1304
Hpy99I	CGWCG	2 cut(s)	1027, 1226
HpyAV	CCTTC	2 cut(s)	503, 537
HpyCH4III	ACNGT	6 cut(s)	34, 222, 660, 843, 1054, 1213
HpyCH4IV	ACGT	2 cut(s)	228, 1022
HpyCH4V	TGCA	6 cut(s)	63, 146, 431, 506, 629, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 503, 775, 814
HpyF3I	CTNAG	4 cut(s)	604, 717, 924, 1011
HpySE526I	ACGT	2 cut(s)	228, 1022
Hsp92II	CATG	7 cut(s)	313, 635, 740, 752, 909, 952, 961
KpnI	GGTACC	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	331, 1300
LguI	GCTCTTC	2 cut(s)	269, 1078
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	5 cut(s)	72, 666, 717, 1123, 1180
MaeI	CTAG	1 cut(s)	1160
MaeII	ACGT	2 cut(s)	228, 1022
MaeIII	GTNAC	5 cut(s)	395, 782, 982, 1006, 1057
MalI	GATC	2 cut(s)	333, 1302
MboI	GATC	2 cut(s)	331, 1300
MfeI	CAATTG	1 cut(s)	860
MhlI	GDGCHC	2 cut(s)	216, 1115
MlsI	TGGCCA	1 cut(s)	947
MluCI	AATT	8 cut(s)	320, 437, 517, 643, 812, 850, 860, 890
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	371, 1110
Mox20I	TGGCCA	1 cut(s)	947
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	1 cut(s)	1107
MslI	CAYNNNNRTG	2 cut(s)	1013, 1188
Msp20I	TGGCCA	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	349
MspCI	CTTAAG	1 cut(s)	1106
MspI	CCGG	4 cut(s)	78, 180, 419, 1062
MspR9I	CCNGG	2 cut(s)	1090, 1317
MunI	CAATTG	1 cut(s)	860
Mva1269I	GAATGC	2 cut(s)	631, 866
MvaI	CCWGG	2 cut(s)	1090, 1317
MwoI	GCNNNNNNNGC	4 cut(s)	428, 503, 775, 814
NaeI	GCCGGC	1 cut(s)	420
NcoI	CCATGG	2 cut(s)	309, 948
NdeII	GATC	2 cut(s)	331, 1300
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	7 cut(s)	313, 635, 740, 752, 909, 952, 961
NlaIV	GGNNCC	2 cut(s)	184, 657
NmeAIII	GCCGAG	1 cut(s)	1094
NmuCI	GTSAC	3 cut(s)	395, 782, 1006
PciSI	GCTCTTC	2 cut(s)	269, 1078
PctI	GAATGC	2 cut(s)	631, 866
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PsiI	TTATAA	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	1115
Psp6I	CCWGG	2 cut(s)	1088, 1315
PspEI	GGTNACC	1 cut(s)	1057
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	1088, 1315
PspN4I	GGNNCC	2 cut(s)	184, 657
PspPI	GGNCC	3 cut(s)	177, 807, 1319
PvuII	CAGCTG	1 cut(s)	349
RigI	GGCCGGCC	1 cut(s)	422
RsaI	GTAC	7 cut(s)	602, 657, 887, 963, 1021, 1272, 1287
RsaNI	GTAC	7 cut(s)	601, 656, 886, 962, 1020, 1271, 1286
RseI	CAYNNNNRTG	2 cut(s)	1013, 1188
SacI	GAGCTC	1 cut(s)	1115
SapI	GCTCTTC	2 cut(s)	269, 1078
SaqAI	TTAA	1 cut(s)	1107
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	331, 1300
Sau96I	GGNCC	3 cut(s)	177, 807, 1319
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	1090, 1317
SduI	GDGCHC	2 cut(s)	216, 1115
SfaNI	GCATC	5 cut(s)	72, 666, 717, 1123, 1180
SinI	GGWCC	2 cut(s)	177, 1319
SmiMI	CAYNNNNRTG	2 cut(s)	1013, 1188
SmlI	CTYRAG	2 cut(s)	112, 1106
SmoI	CTYRAG	2 cut(s)	112, 1106
Sse9I	AATT	8 cut(s)	320, 437, 517, 643, 812, 850, 860, 890
SsiI	CCGC	1 cut(s)	1295
SspMI	CTAG	1 cut(s)	1160
SstI	GAGCTC	1 cut(s)	1115
StyD4I	CCNGG	2 cut(s)	1088, 1315
StyI	CCWWGG	3 cut(s)	309, 335, 948
TaaI	ACNGT	6 cut(s)	34, 222, 660, 843, 1054, 1213
TaiI	ACGT	2 cut(s)	231, 1025
TaqI	TCGA	5 cut(s)	173, 478, 1025, 1221, 1303
TasI	AATT	8 cut(s)	320, 437, 517, 643, 812, 850, 860, 890
TatI	WGTACW	3 cut(s)	600, 1270, 1285
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	1 cut(s)	1107
Tru9I	TTAA	1 cut(s)	1107
TscAI	CASTG	2 cut(s)	225, 787
TseFI	GTSAC	3 cut(s)	395, 782, 1006
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	3 cut(s)	395, 782, 1006
TspDTI	ATGAA	7 cut(s)	4, 153, 287, 478, 652, 826, 843
TspGWI	ACGGA	2 cut(s)	401, 498
TspRI	CASTG	2 cut(s)	225, 787
Vha464I	CTTAAG	1 cut(s)	1106
VpaK11BI	GGWCC	2 cut(s)	177, 1319
XapI	RAATTY	2 cut(s)	850, 890
XcmI	CCANNNNNNNNNTGG	2 cut(s)	365, 955
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.