Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011539

Physical Location & Seq

Genomic Coordinates Forward (+)

88736642 .. 88740696

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCCGGAGAGGAAGTCAGTAGTGAAAGCACCACACTTGAATCAACACCAACATGGGCAGTCGCCACCGTCTGCTTCGTTTTGATTTTCATCTCCATTCTCATCGAGCATTTGCTTCATCTTTTAGCCCATTATTTCAACAAGATAAGGAGGAAGTCTCTCATTCTCGCTCTTGATAAGATCAAATCAGAGTTGATGTTGCTGGGGTTCATTTCTTTGCTGCTAACCGTGGGCCAAAAGCCGATTGCCAACATCTGCATCCCGAAATCTGCCGGAGAGTCTTTTCTTCCTTGCCAGAGCTACACCTTGAGTGAAGATATTGTGGAGGAAACGAAATGTGCAGAGCAGGGAAAGGTTTCCTTGATGTCGAGGTCCGGTGCCAATGAGCTTCAATACTTTATTTTTGTGCTCGCACTGTTCCACGTCTTGTCTTGCGTTCTCACTTCCACTCTTGGTTTTGCCAAGATGAAGAGCTGGCAGTCTTGGGAGGCAGAAACCAGAACCATGGAGTATCAATTTTCTTATGATCCAAGGAGATTTCAGCTGGCACACCAAACCTCATTTGGGAAGAGACATTTGAAATGTTGGAGTGACCACAGAATACTCCGTTGGCCGGCCTGTTTTGCAAGGCAGTTCTTCAGTTCTGTTTCCAAAGTGGATTATTTCACTCTGCGACACGGATTCATAACGATGCTATTGCTTGTGGGAACAAAGCTACAAGGCATCATAACTAAGATGTGTGTAGATAGCCATGATAAATCTCATGTTGTAAGAGGGACTTTGCTTGTGAAGCCCATACAAATTTGGTTTGAAATCATGCTTCCACCGAGAAACCGAGGATATAGTAATACGGCTGGCCATGGGTATCATGGCACAAATCCTGTGTGGCTATGTAACTCTACCTCTTTACGCATTGGTCACTCAGATGGGTACGTCGATGAGAAAAGCTGTCTTCACCGAGACGGTGGTTACCGGGCTGAAAAATGGAGAGGAAGAGCCAGGAAGAACCTTGCTCTTAAGAGCTCGGCACGAATGTCGTTGGATGCTTCCCTTCAAACCTCACTCTCACTAGACACTACACTTTCTTTCAATCACATTGATGCTTCGGCTTCTTTCTCCACCCTGGATTTCGACGCTGAATATGTAGCAGTAGAAATAATGGACAGTGCTGGAAATGTTGTACAGGGAAAACAAGTACCGGAGGCGGAGGATCGAGACCAGAAGCCTGGACCATCATTTGATGGTTTTGATTTGAGTCGTAGTAAAAAATCTCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0043207 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

426

Amino Acids

48.02

Weight (kDa)

8.8

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	11 - 102	9.4e-38	Mlo family
Mlo	PF03094	109 - 230	5e-49	Mlo family
Mlo	PF03094	231 - 270	3.7e-06	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08460 FvH4_3g08460 FvH4_3g08460
malus_domestica	MD10G1288000.v1.1
prunus_persica	Prupe.4G053700_v2.0.a1 Prupe.4G053700_v2.0.a1
pyrus_communis	pycom10g24100
rosa_chinensis	RchiOBHm_Chr5g0009371
rosa_laevigata	RLG00000031656
rosa_multiflora	Rmu_sc0002711.1_g000020
rosa_roxburghii	Rroxscaffold_1G00066720 Rroxscaffold_1G00067420
rosa_rugosa	Rorug04G0442100 Rorug04G0442200 Rorug04G0442300
rosa_samantha	Rh5AG073000 Rh5BG069400 Rh5CG081800 Rh5DG069600
rosa_wichuraiana	Rw5G006820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	1 cut(s)	1205
AclWI	GGATC	2 cut(s)	521, 1218
AcoI	YGGCCR	3 cut(s)	3, 611, 856
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	3 cut(s)	932, 1182, 1197
AfiI	CCNNNNNNNGG	2 cut(s)	564, 613
AflII	CTTAAG	1 cut(s)	1016
AgsI	TTSAA	7 cut(s)	41, 139, 392, 580, 812, 1055, 1090
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	998, 1122, 1225
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AluBI	AGCT	7 cut(s)	300, 388, 474, 544, 715, 948, 1023
AluI	AGCT	7 cut(s)	300, 388, 474, 544, 715, 948, 1023
Alw21I	GWGCWC	2 cut(s)	411, 1025
Alw26I	GTCTC	4 cut(s)	162, 565, 954, 1209
AlwI	GGATC	2 cut(s)	521, 1218
AoxI	GGCC	5 cut(s)	3, 232, 611, 615, 856
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	801
Asp700I	GAANNNNTTC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	232, 372, 1229
AsuC2I	CCSGG	1 cut(s)	974
AsuHPI	GGTGA	1 cut(s)	947
AvaII	GGWCC	2 cut(s)	372, 1229
BalI	TGGCCA	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	411, 1025
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	3 cut(s)	920, 1235, 1240
BceAI	ACGGC	1 cut(s)	867
BcgI	CGANNNNNNTGC	4 cut(s)	679, 713, 1017, 1051
BciT130I	CCWGG	3 cut(s)	1000, 1124, 1227
BcnI	CCSGG	1 cut(s)	974
BcoDI	GTCTC	4 cut(s)	162, 565, 954, 1209
BfaI	CTAG	1 cut(s)	1070
BfrI	CTTAAG	1 cut(s)	1016
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	4 cut(s)	974, 1000, 1124, 1227
Bme18I	GGWCC	2 cut(s)	372, 1229
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	3 cut(s)	232, 372, 1229
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	4 cut(s)	974, 1000, 1124, 1227
BmsI	GCATC	5 cut(s)	267, 681, 732, 1033, 1090
BpiI	GAAGAC	1 cut(s)	944
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	974
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	1209
BsaJI	CCNNGG	6 cut(s)	228, 504, 530, 835, 859, 1122
BsaWI	WCCGGW	2 cut(s)	374, 1198
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 613
Bse118I	RCCGGY	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	3 cut(s)	1000, 1124, 1227
BseDI	CCNNGG	6 cut(s)	228, 504, 530, 835, 859, 1122
BseGI	GGATG	2 cut(s)	258, 1048
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	564, 613
BseMII	CTCAG	1 cut(s)	936
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	5, 234, 613, 617, 858
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	411, 1025
BsiSI	CCGG	6 cut(s)	6, 273, 375, 614, 973, 1199
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	564, 613
BsmAI	GTCTC	4 cut(s)	162, 565, 954, 1209
BsmBI	CGTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	5 cut(s)	5, 234, 613, 617, 858
Bso31I	GGTCTC	1 cut(s)	1209
Bsp1286I	GDGCHC	2 cut(s)	411, 1025
Bsp1407I	TGTACA	1 cut(s)	1180
Bsp143I	GATC	3 cut(s)	180, 526, 1210
Bsp19I	CCATGG	2 cut(s)	504, 859
BspACI	CCGC	1 cut(s)	1205
BspANI	GGCC	5 cut(s)	5, 234, 613, 617, 858
BspCNI	CTCAG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	521, 1218
BspQI	GCTCTTC	2 cut(s)	464, 988
BspT107I	GGYRCC	1 cut(s)	377
BspTI	CTTAAG	1 cut(s)	1016
BspTNI	GGTCTC	1 cut(s)	1209
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	1180
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	6 cut(s)	228, 504, 530, 835, 859, 1122
BssMI	GATC	3 cut(s)	180, 526, 1210
BssT1I	CCWWGG	3 cut(s)	504, 530, 859
Bst2UI	CCWGG	3 cut(s)	1000, 1124, 1227
Bst4CI	ACNGT	5 cut(s)	70, 229, 417, 965, 1166
Bst6I	CTCTTC	3 cut(s)	464, 563, 988
BstAFI	CTTAAG	1 cut(s)	1016
BstAUI	TGTACA	1 cut(s)	1180
BstC8I	GCNNGC	5 cut(s)	411, 476, 546, 615, 856
BstDEI	CTNAG	2 cut(s)	732, 922
BstDSI	CCRYGG	3 cut(s)	228, 504, 859
BstEII	GGTNACC	1 cut(s)	968
BstF5I	GGATG	2 cut(s)	258, 1048
BstKTI	GATC	3 cut(s)	183, 529, 1213
BstMAI	GTCTC	4 cut(s)	162, 565, 954, 1209
BstMBI	GATC	3 cut(s)	180, 526, 1210
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 790
BstNI	CCWGG	3 cut(s)	1000, 1124, 1227
BstPI	GGTNACC	1 cut(s)	968
BstSCI	CCNGG	4 cut(s)	972, 998, 1122, 1225
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	944
BstXI	CCANNNNNNTGG	2 cut(s)	505, 1226
BsuRI	GGCC	5 cut(s)	5, 234, 613, 617, 858
BtgI	CCRYGG	3 cut(s)	228, 504, 859
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	258, 1048
BtsIMutI	CAGTG	2 cut(s)	413, 1171
Cac8I	GCNNGC	5 cut(s)	411, 476, 546, 615, 856
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	232, 372, 1229
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	3 cut(s)	931, 1181, 1196
CviAII	CATG	7 cut(s)	54, 505, 752, 764, 817, 860, 869
CviQI	GTAC	3 cut(s)	931, 1181, 1196
DdeI	CTNAG	2 cut(s)	732, 922
DpnI	GATC	3 cut(s)	182, 528, 1212
DpnII	GATC	3 cut(s)	180, 526, 1210
EaeI	YGGCCR	3 cut(s)	3, 611, 856
Eam1104I	CTCTTC	3 cut(s)	464, 563, 988
EarI	CTCTTC	3 cut(s)	464, 563, 988
EciI	GGCGGA	1 cut(s)	1220
Ecl136II	GAGCTC	1 cut(s)	1023
Eco130I	CCWWGG	3 cut(s)	504, 530, 859
Eco24I	GRGCYC	1 cut(s)	1025
Eco31I	GGTCTC	1 cut(s)	1209
Eco47I	GGWCC	2 cut(s)	372, 1229
Eco53kI	GAGCTC	1 cut(s)	1023
Eco57I	CTGAAG	1 cut(s)	622
Eco91I	GGTNACC	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	1023
EcoO65I	GGTNACC	1 cut(s)	968
EcoRII	CCWGG	3 cut(s)	998, 1122, 1225
EcoT14I	CCWWGG	3 cut(s)	504, 530, 859
EcoT38I	GRGCYC	1 cut(s)	1025
ErhI	CCWWGG	3 cut(s)	504, 530, 859
Esp3I	CGTCTC	1 cut(s)	954
FaeI	CATG	7 cut(s)	57, 508, 755, 767, 820, 863, 872
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 763, 795
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	7 cut(s)	53, 504, 751, 763, 816, 859, 868
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	2 cut(s)	245, 1055
FriOI	GRGCYC	1 cut(s)	1025
FseI	GGCCGGCC	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	1070
GluI	GCNGC	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	5 cut(s)	5, 234, 613, 617, 858
HapII	CCGG	6 cut(s)	6, 273, 375, 614, 973, 1199
HgaI	GACGC	1 cut(s)	1142
Hin1II	CATG	7 cut(s)	57, 508, 755, 767, 820, 863, 872
HinfI	GANTC	4 cut(s)	41, 278, 681, 1255
HpaII	CCGG	6 cut(s)	6, 273, 375, 614, 973, 1199
HphI	GGTGA	1 cut(s)	947
Hpy188I	TCNGA	2 cut(s)	190, 925
Hpy188III	TCNNGA	3 cut(s)	173, 262, 1214
Hpy99I	CGWCG	2 cut(s)	938, 1136
HpyAV	CCTTC	1 cut(s)	1061
HpyCH4III	ACNGT	5 cut(s)	70, 229, 417, 965, 1166
HpyCH4IV	ACGT	2 cut(s)	423, 933
HpyCH4V	TGCA	3 cut(s)	258, 341, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 790
HpyF3I	CTNAG	2 cut(s)	732, 922
HpySE526I	ACGT	2 cut(s)	423, 933
Hsp92II	CATG	7 cut(s)	57, 508, 755, 767, 820, 863, 872
KroI	GCCGGC	1 cut(s)	613
KroNI	GCCGGC	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	180, 526, 1210
LguI	GCTCTTC	2 cut(s)	464, 988
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	5 cut(s)	267, 681, 732, 1033, 1090
MaeI	CTAG	1 cut(s)	1070
MaeII	ACGT	2 cut(s)	423, 933
MaeIII	GTNAC	4 cut(s)	590, 893, 917, 968
MalI	GATC	3 cut(s)	182, 528, 1212
MboI	GATC	3 cut(s)	180, 526, 1210
MboII	GAAGA	8 cut(s)	278, 326, 481, 580, 628, 944, 1005, 1015
MhlI	GDGCHC	2 cut(s)	411, 1025
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	2 cut(s)	515, 801
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	2 cut(s)	287, 1264
MmeI	TCCRAC	2 cut(s)	566, 1020
Mox20I	TGGCCA	1 cut(s)	858
MroNI	GCCGGC	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	1 cut(s)	1017
MslI	CAYNNNNRTG	4 cut(s)	52, 689, 924, 1098
Msp20I	TGGCCA	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	544
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	6 cut(s)	6, 273, 375, 614, 973, 1199
MspR9I	CCNGG	4 cut(s)	974, 1000, 1124, 1227
MvaI	CCWGG	3 cut(s)	1000, 1124, 1227
MwoI	GCNNNNNNNGC	2 cut(s)	623, 790
NaeI	GCCGGC	1 cut(s)	615
NciI	CCSGG	1 cut(s)	974
NcoI	CCATGG	2 cut(s)	504, 859
NdeII	GATC	3 cut(s)	180, 526, 1210
NgoMIV	GCCGGC	1 cut(s)	613
NlaIII	CATG	7 cut(s)	57, 508, 755, 767, 820, 863, 872
NlaIV	GGNNCC	1 cut(s)	379
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	2 cut(s)	590, 917
PciSI	GCTCTTC	2 cut(s)	464, 988
PdiI	GCCGGC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	41, 681
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	286, 1263
PpsI	GAGTC	2 cut(s)	286, 1263
Psp124BI	GAGCTC	1 cut(s)	1025
Psp6I	CCWGG	3 cut(s)	998, 1122, 1225
PspEI	GGTNACC	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	3 cut(s)	998, 1122, 1225
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	3 cut(s)	232, 372, 1229
PvuII	CAGCTG	1 cut(s)	544
RigI	GGCCGGCC	1 cut(s)	617
RsaI	GTAC	3 cut(s)	932, 1182, 1197
RsaNI	GTAC	3 cut(s)	931, 1181, 1196
RseI	CAYNNNNRTG	4 cut(s)	52, 689, 924, 1098
SacI	GAGCTC	1 cut(s)	1025
SapI	GCTCTTC	2 cut(s)	464, 988
SaqAI	TTAA	1 cut(s)	1017
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	180, 526, 1210
Sau96I	GGNCC	3 cut(s)	232, 372, 1229
SchI	GAGTC	2 cut(s)	287, 1264
ScrFI	CCNGG	4 cut(s)	974, 1000, 1124, 1227
SduI	GDGCHC	2 cut(s)	411, 1025
SfaNI	GCATC	5 cut(s)	267, 681, 732, 1033, 1090
SinI	GGWCC	2 cut(s)	372, 1229
SmiMI	CAYNNNNRTG	4 cut(s)	52, 689, 924, 1098
SmlI	CTYRAG	2 cut(s)	307, 1016
SmoI	CTYRAG	2 cut(s)	307, 1016
Sse9I	AATT	2 cut(s)	515, 801
SsiI	CCGC	1 cut(s)	1205
SspMI	CTAG	1 cut(s)	1070
SstI	GAGCTC	1 cut(s)	1025
StyD4I	CCNGG	4 cut(s)	972, 998, 1122, 1225
StyI	CCWWGG	3 cut(s)	504, 530, 859
TaaI	ACNGT	5 cut(s)	70, 229, 417, 965, 1166
TaiI	ACGT	2 cut(s)	426, 936
TaqI	TCGA	5 cut(s)	105, 368, 936, 1131, 1213
TasI	AATT	2 cut(s)	515, 801
TatI	WGTACW	1 cut(s)	1180
TfiI	GAWTC	2 cut(s)	41, 681
Tru1I	TTAA	1 cut(s)	1017
Tru9I	TTAA	1 cut(s)	1017
TscAI	CASTG	2 cut(s)	420, 1171
TseFI	GTSAC	2 cut(s)	590, 917
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	2 cut(s)	590, 917
TspDTI	ATGAA	5 cut(s)	79, 107, 199, 482, 673
TspGWI	ACGGA	2 cut(s)	596, 693
TspRI	CASTG	2 cut(s)	420, 1171
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	2 cut(s)	372, 1229
XapI	RAATTY	1 cut(s)	801
XcmI	CCANNNNNNNNNTGG	2 cut(s)	560, 866
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.