Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012590

Physical Location & Seq

Genomic Coordinates Forward (+)

5072292 .. 5074404

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08680.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTCACAGAGGATCATGAAATGCATCATGGATGGCCTCTTGGGCTTGAGATTATGAGTTTAAGGCTTGGACTGGGGGAGAGCTTACCAGCTGATGTTACAAGACACCATGTACCTTCAACTAGTTTCACCTCATTTTCATCTTCAAACCTTGACACTGAGTCTACAGCATCCTTTTTCCAAGACCACAGCATGTCACTAGGCCGGCTAATTGGGATTCGAGCCAACGATAGAGGGCGCTTGTACTACTCGAATCCAACTAGATTCGATGAACATGACAGGGTTTCTCTAAAAGCTAGTTCGCGAAATTCTGATGTCTCAAGAAGACATCAAGTAGACATGTCTAGACGGATTTGCTTACCGCTGCTGCTTGGTGCTCTTGTAAAGATAAGCAGGAGTAAGAACAAGTCTAAGAAGCCAAAGTTTGAAGGGAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

9.83

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08680 FvH4_3g08680
malus_domestica	MD05G1310700.v1.1 MD10G1289800.v1.1
prunus_persica	Prupe.4G051900_v2.0.a1 Prupe.4G051900_v2.0.a1 Prupe.4G051900_v2.0.a1
pyrus_communis	pycom05g28700
rosa_chinensis	RchiOBHm_Chr5g0009091
rosa_laevigata	RLG00000031629
rosa_multiflora	Rmu_sc0002034.1_g000004
rosa_roxburghii	Rroxscaffold_1G00066890
rosa_rugosa	Rorug04G0441000 Rorug04G0441000
rosa_samantha	Rh5AG070500 Rh5BG067300 Rh5CG078700 Rh5DG066700
rosa_wichuraiana	Rw5G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	164, 336
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	2 cut(s)	114, 245
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	120, 147, 428
AhdI	GACNNNNNGTC	1 cut(s)	160
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	3 cut(s)	84, 92, 296
AluI	AGCT	3 cut(s)	84, 92, 296
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	35, 202
ApeKI	GCWGC	2 cut(s)	364, 367
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	351, 354
BccI	CCATC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	322
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	5 cut(s)	123, 200, 261, 297, 345
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	365, 368
BlsI	GCNGC	2 cut(s)	366, 369
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	34, 179
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	68, 304
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	38, 170
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	351, 354
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	37, 204
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	37, 204
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	13
Bsp68I	TCGCGA	1 cut(s)	304
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	37, 204
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	16
BspPI	GGATC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	159, 411
BstF5I	GGATG	2 cut(s)	38, 170
BstFNI	CGCG	1 cut(s)	304
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	2 cut(s)	196, 343
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	351, 354
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	37, 204
BtsCI	GGATG	2 cut(s)	38, 170
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	206
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	113, 244
CviAII	CATG	6 cut(s)	17, 29, 110, 193, 275, 340
CviQI	GTAC	2 cut(s)	113, 244
DdeI	CTNAG	2 cut(s)	159, 411
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
FaiI	YATR	7 cut(s)	18, 30, 56, 111, 194, 276, 341
FatI	CATG	6 cut(s)	16, 28, 109, 192, 274, 339
FblI	GTMKAC	2 cut(s)	164, 336
Fnu4HI	GCNGC	2 cut(s)	365, 368
FokI	GGATG	2 cut(s)	45, 157
Fsp4HI	GCNGC	2 cut(s)	365, 368
FspBI	CTAG	5 cut(s)	123, 200, 261, 297, 345
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	365, 368
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	37, 204
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	4 cut(s)	161, 217, 253, 264
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	165, 337
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	4 cut(s)	17, 303, 321, 345
Hpy8I	GTNNAC	2 cut(s)	165, 337
HpyAV	CCTTC	2 cut(s)	126, 422
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	159, 411
Hsp92II	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
HspAI	GCGC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	59, 102, 218, 265, 379
Lsp1109I	GCAGC	2 cut(s)	351, 354
LweI	GCATC	2 cut(s)	34, 179
MaeI	CTAG	5 cut(s)	123, 200, 261, 297, 345
MaeIII	GTNAC	3 cut(s)	4, 97, 195
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	135, 336
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	2 cut(s)	210, 307
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	4 cut(s)	4, 48, 142, 227
Mph1103I	ATGCAT	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	204
MseI	TTAA	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	92, 364
MspI	CCGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	43
NaeI	GCCGGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	6 cut(s)	20, 32, 113, 196, 278, 343
NmuCI	GTSAC	2 cut(s)	4, 195
NruI	TCGCGA	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	2 cut(s)	196, 343
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	217, 253, 264
PkrI	GCNGC	2 cut(s)	366, 369
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PscI	ACATGT	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	92
RruI	TCGCGA	1 cut(s)	304
RsaI	GTAC	2 cut(s)	114, 245
RsaNI	GTAC	2 cut(s)	113, 244
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	2 cut(s)	365, 368
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	86, 94, 118, 134, 153, 298
SfaNI	GCATC	2 cut(s)	34, 179
SfcI	CTRYAG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	47, 319
SmoI	CTYRAG	2 cut(s)	47, 319
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	210, 307
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	5 cut(s)	123, 200, 261, 297, 345
TaqI	TCGA	3 cut(s)	220, 251, 267
TasI	AATT	2 cut(s)	210, 307
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	217, 253, 264
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	4, 195
TseI	GCWGC	2 cut(s)	364, 367
Tsp45I	GTSAC	2 cut(s)	4, 195
TspDTI	ATGAA	3 cut(s)	33, 129, 285
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	2 cut(s)	196, 343
XmiI	GTMKAC	2 cut(s)	164, 336
XspI	CTAG	5 cut(s)	123, 200, 261, 297, 345
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.