Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012590

Physical Location & Seq

Genomic Coordinates Reverse (-)

2484776 .. 2487268

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCACGGAGGCTGTTCACGCCATGGCCACGGAGGATCATGAAATGCCCCATGGATGGCCCCTTGGGCTTGAGATCATGAACATGAGACTTAGAGTGGTGGAGAGCTTACCGGCTGCTGTTGTAGGACACCGTCCTTTGCACATACCCTCTGCTAGTTTCACCTCTTTTTCATCCTCCAACCTTGACACTGAGTCCACAGCATCCTTCTTCCAAGACCACAGCATGTCACTAGGCCGGCTAATAGGGTTTCGAACGGGGGATAGAGGACGCTTGTACTACCCAAATTCAATTTGCTTCGAAGAACATGACAGGAATTCCATTAAGGGTTCACATTCTGATGTCTCTACAAGGCATCAAGTAGACACGTCTCGACGAATTTGCATACCATTGATGCTTGGTGCTCTCGTAAAGATAAGCCGCAGTAAGAGTAAGAGCAAGAGCAAGTCAAAGAAGGCAGTGTTTGATGGCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

9.46

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08680 FvH4_3g08680
malus_domestica	MD05G1310700.v1.1 MD10G1289800.v1.1
prunus_persica	Prupe.4G051900_v2.0.a1 Prupe.4G051900_v2.0.a1 Prupe.4G051900_v2.0.a1
pyrus_communis	pycom05g28700
rosa_chinensis	RchiOBHm_Chr5g0009091
rosa_laevigata	RLG00000031629
rosa_multiflora	Rmu_sc0002034.1_g000004
rosa_roxburghii	Rroxscaffold_1G00066890
rosa_rugosa	Rorug04G0441000 Rorug04G0441000
rosa_samantha	Rh5AG070500 Rh5BG067300 Rh5CG078700 Rh5DG066700
rosa_wichuraiana	Rw5G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	2 cut(s)	3, 27
AcsI	RAATTY	3 cut(s)	286, 316, 378
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	57
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	291
AhdI	GACNNNNNGTC	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	369
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	3 cut(s)	82, 349, 375
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	4 cut(s)	3, 27, 59, 235
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	3 cut(s)	286, 316, 378
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	2 cut(s)	253, 300
BalI	TGGCCA	2 cut(s)	5, 29
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	51, 461
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BcoDI	GTCTC	3 cut(s)	82, 349, 375
BfaI	CTAG	2 cut(s)	156, 233
BglI	GCCNNNNNGGC	2 cut(s)	11, 67
BisI	GCNGC	2 cut(s)	117, 421
BlsI	GCNGC	2 cut(s)	118, 422
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	3 cut(s)	212, 364, 384
Bpu14I	TTCGAA	2 cut(s)	253, 300
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	6, 24, 30, 52, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	2 cut(s)	112, 237
BseDI	CCNNGG	5 cut(s)	6, 24, 30, 52, 64
BseGI	GGATG	3 cut(s)	62, 173, 203
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	4 cut(s)	5, 29, 61, 237
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	113, 238
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	3 cut(s)	82, 349, 375
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	5, 29, 61, 237
Bsp119I	TTCGAA	2 cut(s)	253, 300
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	37, 75
Bsp19I	CCATGG	2 cut(s)	24, 52
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	4 cut(s)	5, 29, 61, 237
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	40, 78
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	45
BspT104I	TTCGAA	2 cut(s)	253, 300
BsrFI	RCCGGY	2 cut(s)	112, 237
BssAI	RCCGGY	2 cut(s)	112, 237
BssECI	CCNNGG	5 cut(s)	6, 24, 30, 52, 64
BssMI	GATC	2 cut(s)	37, 75
BssT1I	CCWWGG	3 cut(s)	24, 52, 64
Bst4CI	ACNGT	1 cut(s)	134
BstBI	TTCGAA	2 cut(s)	253, 300
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	92, 192
BstDSI	CCRYGG	4 cut(s)	6, 24, 30, 52
BstF5I	GGATG	3 cut(s)	62, 173, 203
BstKTI	GATC	2 cut(s)	40, 78
BstMAI	GTCTC	3 cut(s)	82, 349, 375
BstMBI	GATC	2 cut(s)	37, 75
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 67
BstNSI	RCATGY	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	5, 29, 61, 237
BtgI	CCRYGG	4 cut(s)	6, 24, 30, 52
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	62, 173, 203
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	189, 465
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	2 cut(s)	40, 78
Cfr10I	RCCGGY	2 cut(s)	112, 237
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	7 cut(s)	25, 41, 53, 79, 85, 226, 308
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	92, 192
DpnI	GATC	2 cut(s)	39, 77
DpnII	GATC	2 cut(s)	37, 75
DriI	GACNNNNNGTC	1 cut(s)	193
EaeI	YGGCCR	2 cut(s)	3, 27
Eam1105I	GACNNNNNGTC	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	24, 52, 64
EcoRI	GAATTC	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	24, 52, 64
ErhI	CCWWGG	3 cut(s)	24, 52, 64
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	7 cut(s)	28, 44, 56, 82, 88, 229, 311
FaiI	YATR	9 cut(s)	26, 42, 54, 80, 86, 146, 227, 309, 386
FatI	CATG	7 cut(s)	24, 40, 52, 78, 84, 225, 307
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	117, 421
FokI	GGATG	3 cut(s)	69, 160, 190
Fsp4HI	GCNGC	2 cut(s)	117, 421
FspBI	CTAG	2 cut(s)	156, 233
GluI	GCNGC	2 cut(s)	117, 421
HaeIII	GGCC	4 cut(s)	5, 29, 61, 237
HapII	CCGG	2 cut(s)	113, 238
HgaI	GACGC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	28, 44, 56, 82, 88, 229, 311
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	113, 238
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	19, 198, 332, 364
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	3 cut(s)	41, 79, 372
Hpy8I	GTNNAC	4 cut(s)	19, 198, 332, 364
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	217, 448
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	142, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 67
HpyF3I	CTNAG	2 cut(s)	92, 192
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	7 cut(s)	28, 44, 56, 82, 88, 229, 311
KroI	GCCGGC	1 cut(s)	237
KroNI	GCCGGC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	37, 75
LpnPI	CCDG	3 cut(s)	126, 251, 298
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	212, 364, 384
MaeI	CTAG	2 cut(s)	156, 233
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	39, 77
MboI	GATC	2 cut(s)	37, 75
MboII	GAAGA	2 cut(s)	202, 314
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	2 cut(s)	5, 29
MluCI	AATT	4 cut(s)	286, 291, 316, 378
MluNI	TGGCCA	2 cut(s)	5, 29
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	4, 28, 160, 175, 187, 260
Mox20I	TGGCCA	2 cut(s)	5, 29
MroNI	GCCGGC	1 cut(s)	237
MscI	TGGCCA	2 cut(s)	5, 29
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	83, 339
Msp20I	TGGCCA	2 cut(s)	5, 29
MspI	CCGG	2 cut(s)	113, 238
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 67
NaeI	GCCGGC	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	24, 52
NdeII	GATC	2 cut(s)	37, 75
NgoMIV	GCCGGC	1 cut(s)	237
NlaIII	CATG	7 cut(s)	28, 44, 56, 82, 88, 229, 311
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	228
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	2 cut(s)	253, 300
PagI	TCATGA	2 cut(s)	40, 78
PdiI	GCCGGC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	118, 422
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	60
PsyI	GACNNNGTC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	83, 339
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	117, 421
Sau3AI	GATC	2 cut(s)	37, 75
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	4 cut(s)	110, 167, 186, 371
SfaNI	GCATC	3 cut(s)	212, 364, 384
SfuI	TTCGAA	2 cut(s)	253, 300
SmiMI	CAYNNNNRTG	2 cut(s)	83, 339
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	286, 291, 316, 378
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	2 cut(s)	156, 233
StyI	CCWWGG	3 cut(s)	24, 52, 64
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	253, 300, 373
TasI	AATT	4 cut(s)	286, 291, 316, 378
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	196, 465
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	57, 95, 162
TspGWI	ACGGA	2 cut(s)	23, 47
TspRI	CASTG	2 cut(s)	196, 465
Tth111I	GACNNNGTC	1 cut(s)	132
XapI	RAATTY	3 cut(s)	286, 316, 378
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	156, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.