Autophagy-related protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 170 | 1.2e-38 | TIR domain |
| TIR_2 | PF13676 | 24 - 117 | 1.5e-16 | TIR domain |
| NB-ARC | PF00931 | 211 - 380 | 1.5e-18 | NB-ARC domain |
| ATPase_2 | PF01637 | 211 - 409 | 2.2e-06 | ATPase domain predominantly from Archaea |
| NACHT | PF05729 | 228 - 379 | 2.8e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 453 - 523 | 5.9e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 720 - 829 | 2.7e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 784 - 880 | 9.1e-12 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 834 - 901 | 6e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 881 - 947 | 1.7e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 936 - 1020 | 5.9e-12 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 1022 - 1249 | 6e-14 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4014 |
| AarI | CACCTGC | 1 cut(s) | 397 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1305, 1430 |
| Acc36I | ACCTGC | 2 cut(s) | 397, 2093 |
| AccB1I | GGYRCC | 1 cut(s) | 2879 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1141 |
| AccI | GTMKAC | 2 cut(s) | 1603, 3061 |
| AccII | CGCG | 3 cut(s) | 144, 183, 1617 |
| AcoI | YGGCCR | 2 cut(s) | 234, 2385 |
| AcsI | RAATTY | 4 cut(s) | 1725, 1900, 3848, 4168 |
| AcuI | CTGAAG | 6 cut(s) | 67, 466, 1304, 1530, 4085, 4159 |
| AfeI | AGCGCT | 1 cut(s) | 1224 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 44, 730, 1141, 2869, 3209, 3615, 3889 |
| AflIII | ACRYGT | 2 cut(s) | 3056, 4021 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 4 cut(s) | 699, 1359, 1588, 3712 |
| Alw21I | GWGCWC | 3 cut(s) | 390, 2211, 2792 |
| Ama87I | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| Aor51HI | AGCGCT | 1 cut(s) | 1224 |
| AoxI | GGCC | 7 cut(s) | 196, 234, 697, 2320, 2385, 3358, 3589 |
| ApeKI | GCWGC | 6 cut(s) | 58, 486, 905, 1879, 2987, 3633 |
| ApoI | RAATTY | 4 cut(s) | 1725, 1900, 3848, 4168 |
| AseI | ATTAAT | 1 cut(s) | 882 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1634, 3166, 3418, 3849 |
| AspLEI | GCGC | 7 cut(s) | 63, 133, 422, 736, 768, 1225, 2188 |
| AspS9I | GGNCC | 5 cut(s) | 178, 197, 374, 1107, 3358 |
| AsuC2I | CCSGG | 4 cut(s) | 100, 101, 614, 3588 |
| AsuHPI | GGTGA | 9 cut(s) | 103, 655, 1124, 1472, 1714, 1730, 2989, 3317, 4109 |
| AvaI | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| AvaII | GGWCC | 3 cut(s) | 178, 374, 1107 |
| AxyI | CCTNAGG | 1 cut(s) | 3686 |
| BaeGI | GKGCMC | 2 cut(s) | 2775, 2965 |
| BalI | TGGCCA | 1 cut(s) | 2387 |
| BamHI | GGATCC | 2 cut(s) | 346, 665 |
| BanI | GGYRCC | 1 cut(s) | 2879 |
| BanII | GRGCYC | 1 cut(s) | 2792 |
| BbsI | GAAGAC | 7 cut(s) | 99, 1415, 1428, 1518, 1561, 2432, 3670 |
| Bbv12I | GWGCWC | 3 cut(s) | 390, 2211, 2792 |
| BbvCI | CCTCAGC | 1 cut(s) | 2909 |
| BbvI | GCAGC | 6 cut(s) | 45, 498, 892, 1866, 2999, 3620 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3263, 3297 |
| BciT130I | CCWGG | 4 cut(s) | 701, 1361, 1590, 3714 |
| BciVI | GTATCC | 2 cut(s) | 3981, 4003 |
| BclI | TGATCA | 2 cut(s) | 1534, 3979 |
| BcnI | CCSGG | 4 cut(s) | 100, 101, 614, 3588 |
| BfaI | CTAG | 9 cut(s) | 161, 1118, 1242, 1352, 1379, 1679, 3171, 3341, 3533 |
| BfmI | CTRYAG | 3 cut(s) | 2086, 2985, 3132 |
| BfoI | RGCGCY | 6 cut(s) | 134, 423, 737, 769, 1226, 2189 |
| BfuAI | ACCTGC | 2 cut(s) | 397, 2093 |
| BfuI | GTATCC | 2 cut(s) | 3981, 4003 |
| BglII | AGATCT | 1 cut(s) | 1970 |
| BlpI | GCTNAGC | 1 cut(s) | 2480 |
| BmcAI | AGTACT | 3 cut(s) | 939, 1470, 2698 |
| Bme1390I | CCNGG | 8 cut(s) | 100, 101, 614, 701, 1361, 1590, 3588, 3714 |
| Bme18I | GGWCC | 3 cut(s) | 178, 374, 1107 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| BmgT120I | GGNCC | 5 cut(s) | 178, 197, 374, 1107, 3358 |
| BmiI | GGNNCC | 6 cut(s) | 348, 667, 1108, 2249, 2672, 2881 |
| BmrFI | CCNGG | 8 cut(s) | 100, 101, 614, 701, 1361, 1590, 3588, 3714 |
| BmrI | ACTGGG | 1 cut(s) | 1151 |
| BmsI | GCATC | 7 cut(s) | 1102, 1270, 1380, 1518, 3012, 3092, 3271 |
| BmuI | ACTGGG | 1 cut(s) | 1151 |
| BpiI | GAAGAC | 7 cut(s) | 99, 1415, 1428, 1518, 1561, 2432, 3670 |
| BpmI | CTGGAG | 2 cut(s) | 1953, 3047 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2909 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2480 |
| BpuEI | CTTGAG | 9 cut(s) | 253, 475, 2225, 2354, 2633, 2915, 2924, 3451, 3726 |
| BpuMI | CCSGG | 4 cut(s) | 100, 101, 614, 3588 |
| BsaAI | YACGTR | 1 cut(s) | 4024 |
| BsaI | GGTCTC | 2 cut(s) | 433, 605 |
| BsaJI | CCNNGG | 8 cut(s) | 99, 181, 254, 423, 700, 729, 1310, 3609 |
| BsaWI | WCCGGW | 1 cut(s) | 371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1851, 1881 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 44, 730, 1141, 2869, 3209, 3615, 3889 |
| Bse118I | RCCGGY | 2 cut(s) | 1159, 3966 |
| Bse1I | ACTGG | 8 cut(s) | 213, 849, 1146, 1210, 3282, 3737, 3894, 4167 |
| Bse21I | CCTNAGG | 1 cut(s) | 3686 |
| Bse3DI | GCAATG | 6 cut(s) | 453, 1383, 1869, 2792, 3422, 3643 |
| BseBI | CCWGG | 4 cut(s) | 701, 1361, 1590, 3714 |
| BseDI | CCNNGG | 8 cut(s) | 99, 181, 254, 423, 700, 729, 1310, 3609 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 44, 730, 1141, 2869, 3209, 3615, 3889 |
| BseMI | GCAATG | 6 cut(s) | 453, 1383, 1869, 2792, 3422, 3643 |
| BseMII | CTCAG | 8 cut(s) | 813, 1286, 2103, 2494, 2777, 2900, 3383, 3677 |
| BseNI | ACTGG | 8 cut(s) | 213, 849, 1146, 1210, 3282, 3737, 3894, 4167 |
| BseRI | GAGGAG | 1 cut(s) | 398 |
| BseSI | GKGCMC | 2 cut(s) | 2775, 2965 |
| BseXI | GCAGC | 6 cut(s) | 45, 498, 892, 1866, 2999, 3620 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 4 cut(s) | 1271, 2074, 2515, 3481 |
| Bsh1236I | CGCG | 3 cut(s) | 144, 183, 1617 |
| BshFI | GGCC | 7 cut(s) | 198, 236, 699, 2322, 2387, 3360, 3591 |
| BshNI | GGYRCC | 1 cut(s) | 2879 |
| BsiHKAI | GWGCWC | 3 cut(s) | 390, 2211, 2792 |
| BsiHKCI | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| BsiSI | CCGG | 9 cut(s) | 55, 100, 372, 614, 1160, 2319, 2458, 3588, 3967 |
| BsiWI | CGTACG | 1 cut(s) | 148 |
| BslFI | GGGAC | 6 cut(s) | 21, 80, 200, 633, 1748, 3247 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 44, 730, 1141, 2869, 3209, 3615, 3889 |
| BsmBI | CGTCTC | 1 cut(s) | 2088 |
| BsmFI | GGGAC | 6 cut(s) | 21, 80, 200, 633, 1748, 3247 |
| BsmI | GAATGC | 1 cut(s) | 3168 |
| BsnI | GGCC | 7 cut(s) | 198, 236, 699, 2322, 2387, 3360, 3591 |
| Bso31I | GGTCTC | 2 cut(s) | 433, 605 |
| BsoBI | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| Bsp1286I | GDGCHC | 5 cut(s) | 390, 2211, 2775, 2792, 2965 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2480 |
| Bsp68I | TCGCGA | 1 cut(s) | 1617 |
| BspANI | GGCC | 7 cut(s) | 198, 236, 699, 2322, 2387, 3360, 3591 |
| BspCNI | CTCAG | 8 cut(s) | 812, 1287, 2104, 2493, 2778, 2901, 3384, 3678 |
| BspFNI | CGCG | 3 cut(s) | 144, 183, 1617 |
| BspHI | TCATGA | 1 cut(s) | 1626 |
| BspLI | GGNNCC | 6 cut(s) | 348, 667, 1108, 2249, 2672, 2881 |
| BspMAI | CTGCAG | 3 cut(s) | 2090, 2989, 3136 |
| BspMI | ACCTGC | 2 cut(s) | 397, 2093 |
| BspT107I | GGYRCC | 1 cut(s) | 2879 |
| BspTNI | GGTCTC | 2 cut(s) | 433, 605 |
| BsrDI | GCAATG | 6 cut(s) | 453, 1383, 1869, 2792, 3422, 3643 |
| BsrFI | RCCGGY | 2 cut(s) | 1159, 3966 |
| BsrI | ACTGG | 8 cut(s) | 213, 849, 1146, 1210, 3282, 3737, 3894, 4167 |
| BssAI | RCCGGY | 2 cut(s) | 1159, 3966 |
| BssECI | CCNNGG | 8 cut(s) | 99, 181, 254, 423, 700, 729, 1310, 3609 |
| BssT1I | CCWWGG | 2 cut(s) | 729, 3609 |
| Bst2UI | CCWGG | 4 cut(s) | 701, 1361, 1590, 3714 |
| Bst6I | CTCTTC | 4 cut(s) | 633, 837, 2658, 3219 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3115, 3642 |
| BstBAI | YACGTR | 1 cut(s) | 4024 |
| BstC8I | GCNNGC | 8 cut(s) | 291, 1595, 2389, 3074, 3388, 3643, 3710, 4142 |
| BstDSI | CCRYGG | 3 cut(s) | 181, 423, 1310 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 728, 2867, 3613 |
| BstFNI | CGCG | 3 cut(s) | 144, 183, 1617 |
| BstH2I | RGCGCY | 6 cut(s) | 134, 423, 737, 769, 1226, 2189 |
| BstHHI | GCGC | 7 cut(s) | 63, 133, 422, 736, 768, 1225, 2188 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 87, 711, 902, 1859, 2194, 3115, 3642, 3705, 4039 |
| BstNI | CCWGG | 4 cut(s) | 701, 1361, 1590, 3714 |
| BstNSI | RCATGY | 5 cut(s) | 1392, 1597, 3060, 3221, 3712 |
| BstSCI | CCNGG | 8 cut(s) | 98, 99, 612, 699, 1359, 1588, 3586, 3712 |
| BstSFI | CTRYAG | 3 cut(s) | 2086, 2985, 3132 |
| BstSLI | GKGCMC | 2 cut(s) | 2775, 2965 |
| BstUI | CGCG | 3 cut(s) | 144, 183, 1617 |
| BstV1I | GCAGC | 6 cut(s) | 45, 498, 892, 1866, 2999, 3620 |
| BstV2I | GAAGAC | 7 cut(s) | 99, 1415, 1428, 1518, 1561, 2432, 3670 |
| BstX2I | RGATCY | 7 cut(s) | 346, 665, 1198, 1315, 1970, 2564, 3879 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 916 |
| BstYI | RGATCY | 7 cut(s) | 346, 665, 1198, 1315, 1970, 2564, 3879 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3686 |
| BsuI | GTATCC | 2 cut(s) | 3981, 4003 |
| BsuRI | GGCC | 7 cut(s) | 198, 236, 699, 2322, 2387, 3360, 3591 |
| BtgI | CCRYGG | 3 cut(s) | 181, 423, 1310 |
| BtgZI | GCGATG | 2 cut(s) | 1632, 3321 |
| BtsI | GCAGTG | 6 cut(s) | 1764, 2095, 2424, 2503, 3141, 3498 |
| BtuMI | TCGCGA | 1 cut(s) | 1617 |
| BveI | ACCTGC | 2 cut(s) | 397, 2093 |
| Cac8I | GCNNGC | 8 cut(s) | 291, 1595, 2389, 3074, 3388, 3643, 3710, 4142 |
| CciI | TCATGA | 1 cut(s) | 1626 |
| CfoI | GCGC | 7 cut(s) | 63, 133, 422, 736, 768, 1225, 2188 |
| Cfr10I | RCCGGY | 2 cut(s) | 1159, 3966 |
| Cfr13I | GGNCC | 5 cut(s) | 178, 197, 374, 1107, 3358 |
| Cfr42I | CCGCGG | 1 cut(s) | 184 |
| Cfr9I | CCCGGG | 1 cut(s) | 99 |
| CpoI | CGGWCCG | 1 cut(s) | 374 |
| CseI | GACGC | 2 cut(s) | 150, 1433 |
| CspI | CGGWCCG | 1 cut(s) | 374 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1305, 1430 |
| DriI | GACNNNNNGTC | 1 cut(s) | 25 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1305, 1430 |
| EaeI | YGGCCR | 2 cut(s) | 234, 2385 |
| Eam1104I | CTCTTC | 4 cut(s) | 633, 837, 2658, 3219 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 4 cut(s) | 633, 837, 2658, 3219 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 1 cut(s) | 2790 |
| Eco130I | CCWWGG | 2 cut(s) | 729, 3609 |
| Eco24I | GRGCYC | 1 cut(s) | 2792 |
| Eco31I | GGTCTC | 2 cut(s) | 433, 605 |
| Eco32I | GATATC | 1 cut(s) | 661 |
| Eco47I | GGWCC | 3 cut(s) | 178, 374, 1107 |
| Eco47III | AGCGCT | 1 cut(s) | 1224 |
| Eco53kI | GAGCTC | 1 cut(s) | 2790 |
| Eco57I | CTGAAG | 6 cut(s) | 67, 466, 1304, 1530, 4085, 4159 |
| Eco81I | CCTNAGG | 1 cut(s) | 3686 |
| Eco88I | CYCGRG | 3 cut(s) | 99, 630, 2471 |
| EcoICRI | GAGCTC | 1 cut(s) | 2790 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 728, 2867, 3613 |
| EcoRII | CCWGG | 4 cut(s) | 699, 1359, 1588, 3712 |
| EcoRV | GATATC | 1 cut(s) | 661 |
| EcoT14I | CCWWGG | 2 cut(s) | 729, 3609 |
| EcoT22I | ATGCAT | 1 cut(s) | 1533 |
| EcoT38I | GRGCYC | 1 cut(s) | 2792 |
| ErhI | CCWWGG | 2 cut(s) | 729, 3609 |
| Esp3I | CGTCTC | 1 cut(s) | 2088 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1358, 1390, 2468, 2500 |
| FaqI | GGGAC | 6 cut(s) | 21, 80, 200, 633, 1748, 3247 |
| FauI | CCCGC | 1 cut(s) | 176 |
| FbaI | TGATCA | 2 cut(s) | 1534, 3979 |
| FblI | GTMKAC | 2 cut(s) | 1603, 3061 |
| FriOI | GRGCYC | 1 cut(s) | 2792 |
| FspBI | CTAG | 9 cut(s) | 161, 1118, 1242, 1352, 1379, 1679, 3171, 3341, 3533 |
| GlaI | GCGC | 7 cut(s) | 62, 132, 421, 735, 767, 1224, 2187 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 2 cut(s) | 1953, 3047 |
| HaeII | RGCGCY | 6 cut(s) | 134, 423, 737, 769, 1226, 2189 |
| HaeIII | GGCC | 7 cut(s) | 198, 236, 699, 2322, 2387, 3360, 3591 |
| HapII | CCGG | 9 cut(s) | 55, 100, 372, 614, 1160, 2319, 2458, 3588, 3967 |
| HgaI | GACGC | 2 cut(s) | 150, 1433 |
| HhaI | GCGC | 7 cut(s) | 63, 133, 422, 736, 768, 1225, 2188 |
| Hin6I | GCGC | 7 cut(s) | 61, 131, 420, 734, 766, 1223, 2186 |
| HinP1I | GCGC | 7 cut(s) | 61, 131, 420, 734, 766, 1223, 2186 |
| HincII | GTYRAC | 2 cut(s) | 30, 1837 |
| HindII | GTYRAC | 2 cut(s) | 30, 1837 |
| HindIII | AAGCTT | 8 cut(s) | 79, 1851, 2228, 2291, 2330, 2749, 3074, 3154 |
| HpaI | GTTAAC | 1 cut(s) | 1837 |
| HpaII | CCGG | 9 cut(s) | 55, 100, 372, 614, 1160, 2319, 2458, 3588, 3967 |
| HphI | GGTGA | 9 cut(s) | 103, 655, 1124, 1472, 1714, 1730, 2989, 3317, 4109 |
| Hpy166II | GTNNAC | 7 cut(s) | 30, 1310, 1604, 1837, 2266, 3062, 3405 |
| Hpy8I | GTNNAC | 7 cut(s) | 30, 1310, 1604, 1837, 2266, 3062, 3405 |
| Hpy99I | CGWCG | 4 cut(s) | 20, 144, 359, 1039 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 357, 4023 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 87, 711, 902, 1859, 2194, 3115, 3642, 3705, 4039 |
| HpySE526I | ACGT | 3 cut(s) | 69, 357, 4023 |
| HspAI | GCGC | 7 cut(s) | 61, 131, 420, 734, 766, 1223, 2186 |
| Ksp22I | TGATCA | 2 cut(s) | 1534, 3979 |
| KspAI | GTTAAC | 1 cut(s) | 1837 |
| KspI | CCGCGG | 1 cut(s) | 184 |
| LmnI | GCTCC | 3 cut(s) | 385, 1859, 4060 |
| Lsp1109I | GCAGC | 6 cut(s) | 45, 498, 892, 1866, 2999, 3620 |
| LweI | GCATC | 7 cut(s) | 1102, 1270, 1380, 1518, 3012, 3092, 3271 |
| MaeI | CTAG | 9 cut(s) | 161, 1118, 1242, 1352, 1379, 1679, 3171, 3341, 3533 |
| MaeII | ACGT | 3 cut(s) | 69, 357, 4023 |
| MfeI | CAATTG | 5 cut(s) | 1428, 1756, 2074, 2946, 3998 |
| MflI | RGATCY | 7 cut(s) | 346, 665, 1198, 1315, 1970, 2564, 3879 |
| MhlI | GDGCHC | 5 cut(s) | 390, 2211, 2775, 2792, 2965 |
| MlsI | TGGCCA | 1 cut(s) | 2387 |
| MluNI | TGGCCA | 1 cut(s) | 2387 |
| MlyI | GAGTC | 5 cut(s) | 196, 218, 260, 1944, 2951 |
| MmeI | TCCRAC | 5 cut(s) | 378, 667, 1080, 2788, 3998 |
| Mox20I | TGGCCA | 1 cut(s) | 2387 |
| Mph1103I | ATGCAT | 1 cut(s) | 1533 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1634, 3166, 3418, 3849 |
| MscI | TGGCCA | 1 cut(s) | 2387 |
| MslI | CAYNNNNRTG | 2 cut(s) | 914, 3020 |
| Msp20I | TGGCCA | 1 cut(s) | 2387 |
| MspA1I | CMGCKG | 4 cut(s) | 183, 896, 3049, 3653 |
| MspI | CCGG | 9 cut(s) | 55, 100, 372, 614, 1160, 2319, 2458, 3588, 3967 |
| MspR9I | CCNGG | 8 cut(s) | 100, 101, 614, 701, 1361, 1590, 3588, 3714 |
| MunI | CAATTG | 5 cut(s) | 1428, 1756, 2074, 2946, 3998 |
| Mva1269I | GAATGC | 1 cut(s) | 3168 |
| MvaI | CCWGG | 4 cut(s) | 701, 1361, 1590, 3714 |
| MvnI | CGCG | 3 cut(s) | 144, 183, 1617 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 87, 711, 902, 1859, 2194, 3115, 3642, 3705, 4039 |
| NciI | CCSGG | 4 cut(s) | 100, 101, 614, 3588 |
| NlaIV | GGNNCC | 6 cut(s) | 348, 667, 1108, 2249, 2672, 2881 |
| NmeAIII | GCCGAG | 2 cut(s) | 206, 279 |
| NmuCI | GTSAC | 5 cut(s) | 1130, 1718, 2728, 3136, 4097 |
| NruI | TCGCGA | 1 cut(s) | 1617 |
| NsiI | ATGCAT | 1 cut(s) | 1533 |
| NspI | RCATGY | 5 cut(s) | 1392, 1597, 3060, 3221, 3712 |
| PaeI | GCATGC | 2 cut(s) | 1597, 3712 |
| PaeR7I | CTCGAG | 1 cut(s) | 2471 |
| PagI | TCATGA | 1 cut(s) | 1626 |
| PaqCI | CACCTGC | 1 cut(s) | 397 |
| PciI | ACATGT | 1 cut(s) | 3056 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 148, 4098 |
| PctI | GAATGC | 1 cut(s) | 3168 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1634, 3166, 3418, 3849 |
| Pfl23II | CGTACG | 1 cut(s) | 148 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1141 |
| PleI | GAGTC | 5 cut(s) | 196, 218, 260, 1943, 2950 |
| PpsI | GAGTC | 5 cut(s) | 196, 218, 260, 1943, 2950 |
| Ppu21I | YACGTR | 1 cut(s) | 4024 |
| PscI | ACATGT | 1 cut(s) | 3056 |
| PshBI | ATTAAT | 1 cut(s) | 882 |
| PsiI | TTATAA | 1 cut(s) | 4014 |
| Psp124BI | GAGCTC | 1 cut(s) | 2792 |
| Psp6I | CCWGG | 4 cut(s) | 699, 1359, 1588, 3712 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 4 cut(s) | 699, 1359, 1588, 3712 |
| PspLI | CGTACG | 1 cut(s) | 148 |
| PspN4I | GGNNCC | 6 cut(s) | 348, 667, 1108, 2249, 2672, 2881 |
| PspPI | GGNCC | 5 cut(s) | 178, 197, 374, 1107, 3358 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 930, 962 |
| PstI | CTGCAG | 3 cut(s) | 2090, 2989, 3136 |
| PsuI | RGATCY | 7 cut(s) | 346, 665, 1198, 1315, 1970, 2564, 3879 |
| PvuII | CAGCTG | 2 cut(s) | 3049, 3653 |
| RruI | TCGCGA | 1 cut(s) | 1617 |
| RseI | CAYNNNNRTG | 2 cut(s) | 914, 3020 |
| Rsr2I | CGGWCCG | 1 cut(s) | 374 |
| RsrII | CGGWCCG | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 2792 |
| SacII | CCGCGG | 1 cut(s) | 184 |
| Sau96I | GGNCC | 5 cut(s) | 178, 197, 374, 1107, 3358 |
| ScaI | AGTACT | 3 cut(s) | 939, 1470, 2698 |
| SchI | GAGTC | 5 cut(s) | 196, 218, 260, 1944, 2951 |
| ScrFI | CCNGG | 8 cut(s) | 100, 101, 614, 701, 1361, 1590, 3588, 3714 |
| SduI | GDGCHC | 5 cut(s) | 390, 2211, 2775, 2792, 2965 |
| SfaNI | GCATC | 7 cut(s) | 1102, 1270, 1380, 1518, 3012, 3092, 3271 |
| SfcI | CTRYAG | 3 cut(s) | 2086, 2985, 3132 |
| Sfr274I | CTCGAG | 1 cut(s) | 2471 |
| Sfr303I | CCGCGG | 1 cut(s) | 184 |
| SgrBI | CCGCGG | 1 cut(s) | 184 |
| SinI | GGWCC | 3 cut(s) | 178, 374, 1107 |
| SlaI | CTCGAG | 1 cut(s) | 2471 |
| SmaI | CCCGGG | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 914, 3020 |
| SphI | GCATGC | 2 cut(s) | 1597, 3712 |
| SspMI | CTAG | 9 cut(s) | 161, 1118, 1242, 1352, 1379, 1679, 3171, 3341, 3533 |
| SstI | GAGCTC | 1 cut(s) | 2792 |
| StyD4I | CCNGG | 8 cut(s) | 98, 99, 612, 699, 1359, 1588, 3586, 3712 |
| StyI | CCWWGG | 2 cut(s) | 729, 3609 |
| TaiI | ACGT | 3 cut(s) | 72, 360, 4026 |
| TaqI | TCGA | 7 cut(s) | 219, 1058, 1967, 2240, 2278, 2472, 3324 |
| TatI | WGTACW | 3 cut(s) | 937, 1468, 2696 |
| TauI | GCSGC | 5 cut(s) | 147, 233, 236, 3378, 4042 |
| TseFI | GTSAC | 5 cut(s) | 1130, 1718, 2728, 3136, 4097 |
| TseI | GCWGC | 6 cut(s) | 58, 486, 905, 1879, 2987, 3633 |
| Tsp45I | GTSAC | 5 cut(s) | 1130, 1718, 2728, 3136, 4097 |
| TspGWI | ACGGA | 3 cut(s) | 597, 1011, 2112 |
| TspMI | CCCGGG | 1 cut(s) | 99 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1141 |
| VpaK11BI | GGWCC | 3 cut(s) | 178, 374, 1107 |
| VspI | ATTAAT | 1 cut(s) | 882 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 728, 2867, 3613 |
| XapI | RAATTY | 4 cut(s) | 1725, 1900, 3848, 4168 |
| XbaI | TCTAGA | 3 cut(s) | 1117, 1351, 1378 |
| XceI | RCATGY | 5 cut(s) | 1392, 1597, 3060, 3221, 3712 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 868, 2599, 3022, 4004 |
| XhoI | CTCGAG | 1 cut(s) | 2471 |
| XmaI | CCCGGG | 1 cut(s) | 99 |
| XmiI | GTMKAC | 2 cut(s) | 1603, 3061 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1634, 3166, 3418, 3849 |
| XspI | CTAG | 9 cut(s) | 161, 1118, 1242, 1352, 1379, 1679, 3171, 3341, 3533 |
| ZrmI | AGTACT | 3 cut(s) | 939, 1470, 2698 |
| Zsp2I | ATGCAT | 1 cut(s) | 1533 |