FvH4_3g02420

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000985
Physical Location & Seq
Reverse (-)
1214342 .. 1217361
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02420.t1

Sequence Viewer

Length: 297 bp
ATGGCCTCATTCGCCGCCAGGTCCATGCTCCGCTCCGCCGCCGCCAGAACCACCACTCTGGGTTCCCGGGTCGCCTCCGCTGCCCGACCCAAACCCGCCGCCGCACCATTCAGCATCCCCAAGCAAAACAACAACCCCATCTCTCACGCCCTTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGTCGTTACTTCCCTACCACTCTGCCACAGCCTCTGCATTGCTCACTTCCATGCTCTCCGTCTCGCAACGCTCTTACGGTTGGACCCCTCAAGGCAATGATGATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.34

Weight (kDa)

10.04

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 9 cut(s) 15, 31, 36, 39, 42, 78, 96, 99, 102
AfiI CCNNNNNNNGG 1 cut(s) 156
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 80, 177, 180
AspS9I GGNCC 2 cut(s) 21, 270
AsuC2I CCSGG 2 cut(s) 67, 68
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 2 cut(s) 21, 270
BbvI GCAGC 3 cut(s) 67, 164, 167
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 19
BcnI CCSGG 2 cut(s) 67, 68
BcoDI GTCTC 1 cut(s) 253
BisI GCNGC 8 cut(s) 15, 39, 42, 81, 99, 102, 178, 181
BlsI GCNGC 8 cut(s) 16, 40, 43, 82, 100, 103, 179, 182
Bme1390I CCNGG 3 cut(s) 19, 67, 68
Bme18I GGWCC 2 cut(s) 21, 270
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 21, 270
BmiI GGNNCC 2 cut(s) 64, 272
BmrFI CCNGG 3 cut(s) 19, 67, 68
BmsI GCATC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 67, 68
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 2 cut(s) 224, 289
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 2 cut(s) 224, 289
BseXI GCAGC 3 cut(s) 67, 164, 167
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 66
BspACI CCGC 9 cut(s) 15, 31, 36, 39, 42, 78, 96, 99, 102
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 64, 272
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 224, 289
BssECI CCNNGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 266
BstF5I GGATG 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 11, 80
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 17, 65, 66
BstV1I GCAGC 3 cut(s) 67, 164, 167
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 21, 270
Cfr9I CCCGGG 1 cut(s) 66
CviAII CATG 2 cut(s) 25, 238
CviJI RGCY 3 cut(s) 5, 177, 218
CviKI_1 RGCY 3 cut(s) 5, 177, 218
EciI GGCGGA 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 21, 270
Eco88I CYCGRG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 2 cut(s) 28, 241
FaiI YATR 2 cut(s) 26, 239
FatI CATG 2 cut(s) 24, 237
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 8 cut(s) 15, 39, 42, 81, 99, 102, 178, 181
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 8 cut(s) 15, 39, 42, 81, 99, 102, 178, 181
GluI GCNGC 8 cut(s) 15, 39, 42, 81, 99, 102, 178, 181
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 28, 241
HinfI GANTC 2 cut(s) 188, 290
HpaII CCGG 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 80
Hsp92II CATG 2 cut(s) 28, 241
LmnI GCTCC 2 cut(s) 33, 38
LpnPI CCDG 7 cut(s) 4, 31, 44, 58, 80, 142, 177
Lsp1109I GCAGC 3 cut(s) 67, 164, 167
LweI GCATC 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 4 cut(s) 16, 85, 229, 285
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 3 cut(s) 19, 67, 68
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 11, 80
NciI CCSGG 2 cut(s) 67, 68
NlaIII CATG 2 cut(s) 28, 241
NlaIV GGNNCC 2 cut(s) 64, 272
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 8 cut(s) 16, 40, 43, 82, 100, 103, 179, 182
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 64, 272
PspPI GGNCC 2 cut(s) 21, 270
PstNI CAGNNNCTG 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 236
SatI GCNGC 8 cut(s) 15, 39, 42, 81, 99, 102, 178, 181
Sau96I GGNCC 2 cut(s) 21, 270
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 19, 67, 68
SetI ASST 3 cut(s) 23, 161, 179
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 2 cut(s) 21, 270
SmaI CCCGGG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SsiI CCGC 9 cut(s) 15, 31, 36, 39, 42, 78, 96, 99, 102
StyD4I CCNGG 3 cut(s) 17, 65, 66
TaaI ACNGT 1 cut(s) 266
TauI GCSGC 5 cut(s) 17, 41, 44, 101, 104
TfiI GAWTC 1 cut(s) 290
TseI GCWGC 3 cut(s) 80, 177, 180
TspGWI ACGGA 1 cut(s) 235
TspMI CCCGGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 21, 270
XmaI CCCGGG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.