Rh5CG078600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000985
Physical Location & Seq
Reverse (-)
5895315 .. 5898584
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG078600.1

Sequence Viewer

Length: 285 bp
ATGGCCTCCTTCGCCGCTAGGTCCATGCTCCGCTCCGCCGCGGCCAGAACCACTCTGGGTTCTCGGGTCGCCTCCGCAACCCGACCCAAACCCGCCGCCGCACCATTCACCATCCCCAAACAAAACAAAAACCCCATCTCTCACGCCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCACACAGCCACAGCCTCTGCATTGCTGACCTCGATGCTCTCCGTCTCGCAACGCTCCTACGGTTGGACCCCTGAAGGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.95

Weight (kDa)

10.52

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 41
AciI CCGC 9 cut(s) 15, 31, 36, 39, 41, 75, 93, 96, 99
AcoI YGGCCR 1 cut(s) 42
AfiI CCNNNNNNNGG 5 cut(s) 153, 264, 276, 277, 278
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 179, 250
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 3, 42
ApeKI GCWGC 2 cut(s) 174, 177
AspS9I GGNCC 2 cut(s) 21, 267
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 21, 267
BbvI GCAGC 2 cut(s) 161, 164
BccI CCATC 2 cut(s) 119, 143
BcoDI GTCTC 2 cut(s) 179, 250
BfaI CTAG 1 cut(s) 18
BisI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
BlsI GCNGC 7 cut(s) 16, 40, 43, 97, 100, 176, 179
Bme18I GGWCC 2 cut(s) 21, 267
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 21, 267
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 264, 276, 277, 278
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 5 cut(s) 153, 264, 276, 277, 278
BseMI GCAATG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 161, 164
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 5, 44
BsiHKCI CYCGRG 1 cut(s) 63
BslI CCNNNNNNNGG 5 cut(s) 153, 264, 276, 277, 278
BsmAI GTCTC 2 cut(s) 179, 250
BsmBI CGTCTC 2 cut(s) 179, 250
BsnI GGCC 2 cut(s) 5, 44
BsoBI CYCGRG 1 cut(s) 63
BspACI CCGC 9 cut(s) 15, 31, 36, 39, 41, 75, 93, 96, 99
BspANI GGCC 2 cut(s) 5, 44
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 269
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 41
BstMAI GTCTC 2 cut(s) 179, 250
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 161, 164
BsuRI GGCC 2 cut(s) 5, 44
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 21, 267
Cfr42I CCGCGG 1 cut(s) 42
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 5, 44, 174, 209, 215
CviKI_1 RGCY 5 cut(s) 5, 44, 174, 209, 215
EaeI YGGCCR 1 cut(s) 42
EciI GGCGGA 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 21, 267
Eco88I CYCGRG 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 179, 250
FaeI CATG 1 cut(s) 28
FaiI YATR 1 cut(s) 26
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
FspBI CTAG 1 cut(s) 18
GluI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
HaeIII GGCC 2 cut(s) 5, 44
Hin1II CATG 1 cut(s) 28
HphI GGTGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 19, 269
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 1 cut(s) 28
KspI CCGCGG 1 cut(s) 42
LmnI GCTCC 3 cut(s) 33, 38, 260
LpnPI CCDG 4 cut(s) 41, 58, 139, 174
Lsp1109I GCAGC 2 cut(s) 161, 164
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 188
MbiI CCGCTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 16, 82, 226, 241
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 269
PkrI GCNGC 7 cut(s) 16, 40, 43, 97, 100, 176, 179
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 21, 267
PstNI CAGNNNCTG 1 cut(s) 218
SacII CCGCGG 1 cut(s) 42
SatI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
Sau96I GGNCC 2 cut(s) 21, 267
SetI ASST 5 cut(s) 23, 158, 176, 191, 233
SfaNI GCATC 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 2 cut(s) 21, 267
SsiI CCGC 9 cut(s) 15, 31, 36, 39, 41, 75, 93, 96, 99
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 233
TauI GCSGC 5 cut(s) 17, 41, 44, 98, 101
TseI GCWGC 2 cut(s) 174, 177
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 21, 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.