Rmu_sc0002034.1_g000006

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002034.1
OG0000985
Physical Location & Seq
Forward (+)
17647 .. 18077
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002034.1_g000006.1.cds

Sequence Viewer

Length: 321 bp
atggcctccttcgccgctaggtccatgctccgctccgccgcagccagaaccactctgggttctcgggtcgcctccgcaacccgacccaaacccgccgccgcatcattcaccatccccaaacaaaacaaaaaccccatctctcacgccattttcaggtcgcctgtggagttgagctgctgcgtggagacgttgcttccctaccacacggccacagcctctgcattgctgacctcgatgctctccgtctcgcaacgctcctacggttggacccctgaaggtattccctcttttgcattcgaattgattttgttggattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.33

Weight (kDa)

9.89

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 8 cut(s) 15, 31, 36, 39, 75, 93, 96, 99
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 2 cut(s) 153, 264
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 179, 250
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 3, 207
ApeKI GCWGC 3 cut(s) 41, 174, 177
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 21, 267
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 21, 267
BbvI GCAGC 3 cut(s) 53, 161, 164
BccI CCATC 2 cut(s) 119, 143
BceAI ACGGC 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 179, 250
BfaI CTAG 1 cut(s) 18
BisI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
BlsI GCNGC 7 cut(s) 16, 40, 43, 97, 100, 176, 179
Bme18I GGWCC 2 cut(s) 21, 267
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 21, 267
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 2 cut(s) 110, 225
Bpu14I TTCGAA 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 264
Bse3DI GCAATG 1 cut(s) 221
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 153, 264
BseMI GCAATG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 53, 161, 164
BshFI GGCC 2 cut(s) 5, 209
BsiHKCI CYCGRG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 153, 264
BsmAI GTCTC 2 cut(s) 179, 250
BsmBI CGTCTC 2 cut(s) 179, 250
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 5, 209
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 297
BspACI CCGC 8 cut(s) 15, 31, 36, 39, 75, 93, 96, 99
BspANI GGCC 2 cut(s) 5, 209
BspLI GGNNCC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 297
BstF5I GGATG 1 cut(s) 111
BstMAI GTCTC 2 cut(s) 179, 250
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 53, 161, 164
BsuRI GGCC 2 cut(s) 5, 209
BtsCI GGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 21, 267
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 5, 44, 174, 209, 215
CviKI_1 RGCY 5 cut(s) 5, 44, 174, 209, 215
EaeI YGGCCR 1 cut(s) 207
EciI GGCGGA 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 21, 267
Eco57I CTGAAG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 179, 250
FaeI CATG 1 cut(s) 28
FaiI YATR 1 cut(s) 26
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
FspBI CTAG 1 cut(s) 18
GluI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
HaeIII GGCC 2 cut(s) 5, 209
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 314
HphI GGTGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 19, 269
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 221, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 1 cut(s) 28
LmnI GCTCC 3 cut(s) 33, 38, 260
LpnPI CCDG 5 cut(s) 41, 58, 139, 174, 285
Lsp1109I GCAGC 3 cut(s) 53, 161, 164
LweI GCATC 2 cut(s) 110, 225
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 188
MbiI CCGCTC 1 cut(s) 33
MluCI AATT 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 245, 291
MnlI CCTC 5 cut(s) 16, 82, 226, 241, 295
MroXI GAANNNNTTC 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 269
NspV TTCGAA 1 cut(s) 297
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 7 cut(s) 16, 40, 43, 97, 100, 176, 179
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 21, 267
PstNI CAGNNNCTG 1 cut(s) 218
SatI GCNGC 7 cut(s) 15, 39, 42, 96, 99, 175, 178
Sau96I GGNCC 2 cut(s) 21, 267
SetI ASST 6 cut(s) 23, 158, 176, 191, 233, 280
SfaNI GCATC 2 cut(s) 110, 225
SfuI TTCGAA 1 cut(s) 297
SinI GGWCC 2 cut(s) 21, 267
Sse9I AATT 1 cut(s) 299
SsiI CCGC 8 cut(s) 15, 31, 36, 39, 75, 93, 96, 99
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 233, 297
TasI AATT 1 cut(s) 299
TauI GCSGC 4 cut(s) 17, 41, 98, 101
TfiI GAWTC 1 cut(s) 314
TseI GCWGC 3 cut(s) 41, 174, 177
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 21, 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.