Rroxscaffold_1G00069900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000985
Physical Location & Seq
Forward (+)
90756317 .. 90758011
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069900.1

Sequence Viewer

Length: 330 bp
ATGGCCTCCTTCGCCGCCAGGTCAATGCTCCGCTCGGCCACGGCCAGAACCACTCTGGGTTCTCGAGTCGCCTCAGCAGCCCGACCCAAACCCGCCGCCGCCCCATTCAGCATCCCCAAACAAAACAAAAATCCCATCTCTCAAGCCATTTTCAGCTTTGTGAAAGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCACACGGCCACAGCCTCTGCGTTGCTCACCTCGATGCTCTCCGTCTCGCAACGCTCCTACGGTTGGACCCTGAAGTTATTCCCTCTTTTGCAGTTGAATTGATTTCGTGGGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.51

Weight (kDa)

10.41

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 5 cut(s) 15, 31, 93, 96, 99
AcoI YGGCCR 3 cut(s) 36, 42, 217
AcuI CTGAAG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 156, 184
AluI AGCT 2 cut(s) 156, 184
Alw26I GTCTC 2 cut(s) 189, 260
AlwNI CAGNNNCTG 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 4 cut(s) 3, 36, 42, 217
ApeKI GCWGC 3 cut(s) 77, 184, 187
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 89, 171, 174
BccI CCATC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 57, 232
BciT130I CCWGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 189, 260
BisI GCNGC 6 cut(s) 15, 78, 96, 99, 185, 188
BlsI GCNGC 6 cut(s) 16, 79, 97, 100, 186, 189
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 120, 235
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 89, 171, 174
BshFI GGCC 4 cut(s) 5, 38, 44, 219
BsiHKCI CYCGRG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 189, 260
BsmBI CGTCTC 2 cut(s) 189, 260
BsnI GGCC 4 cut(s) 5, 38, 44, 219
BsoBI CYCGRG 1 cut(s) 63
BspACI CCGC 5 cut(s) 15, 31, 93, 96, 99
BspANI GGCC 4 cut(s) 5, 38, 44, 219
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 279
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 111
BstMAI GTCTC 2 cut(s) 189, 260
BstMWI GCNNNNNNNGC 2 cut(s) 11, 77
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 89, 171, 174
BsuRI GGCC 4 cut(s) 5, 38, 44, 219
BtgI CCRYGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 277
CviJI RGCY 9 cut(s) 5, 38, 44, 80, 146, 156, 184, 219, 225
CviKI_1 RGCY 9 cut(s) 5, 38, 44, 80, 146, 156, 184, 219, 225
DdeI CTNAG 1 cut(s) 73
EaeI YGGCCR 3 cut(s) 36, 42, 217
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 17
Esp3I CGTCTC 2 cut(s) 189, 260
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 6 cut(s) 15, 78, 96, 99, 185, 188
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 6 cut(s) 15, 78, 96, 99, 185, 188
GluI GCNGC 6 cut(s) 15, 78, 96, 99, 185, 188
HaeIII GGCC 4 cut(s) 5, 38, 44, 219
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 77
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 198
LmnI GCTCC 2 cut(s) 33, 270
LpnPI CCDG 6 cut(s) 4, 31, 41, 58, 184, 294
Lsp1109I GCAGC 3 cut(s) 89, 171, 174
LweI GCATC 2 cut(s) 120, 235
MaeII ACGT 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 33
MluCI AATT 1 cut(s) 308
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 16, 82, 236, 251, 304
MroXI GAANNNNTTC 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 11, 77
NlaIV GGNNCC 1 cut(s) 279
NmeAIII GCCGAG 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 288
PkrI GCNGC 6 cut(s) 16, 79, 97, 100, 186, 189
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 243
SatI GCNGC 6 cut(s) 15, 78, 96, 99, 185, 188
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 19
SetI ASST 5 cut(s) 23, 158, 186, 201, 243
SfaNI GCATC 2 cut(s) 120, 235
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 63, 141
SmoI CTYRAG 2 cut(s) 63, 141
Sse9I AATT 1 cut(s) 308
SsiI CCGC 5 cut(s) 15, 31, 93, 96, 99
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 64, 243
TasI AATT 1 cut(s) 308
TauI GCSGC 3 cut(s) 17, 98, 101
TseI GCWGC 3 cut(s) 77, 184, 187
TspGWI ACGGA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.