Rroxscaffold_1G00066920

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000985
Physical Location & Seq
Forward (+)
88368543 .. 88369133
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066920.1

Sequence Viewer

Length: 393 bp
ATGTCCTCCTTGGCCGCTAGGTCAGTGCTCCGCTCCACTGCGTCTCGAACCACCCAACTGCGTTCGAGGCTCACTTTCGCAGCCAAAACAAAACCAGTCGCCTTACCCTTTAGCATCCCCAAACAGAACCAAAACCTACTCTCTCATCGCATCTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCATACAGCCACAGCCTGTGCATTGCTCACTTCGAAGCTAGAAGTCTCGCAACGCTCCTATGTTTTGATCCCTGAAGCGGTTCATTTTAGTTGCGGTTATGTTCAATTTCACGGGCTGATAGGGAAGCCAATTTGTGTTAAGCAAAGCTGTGAATTGCAAAAGACAACGCTTTTGTATTGTTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

9.63

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 4 cut(s) 15, 31, 281, 297
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 139, 297
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 308, 388
AluBI AGCT 3 cut(s) 177, 241, 351
AluI AGCT 3 cut(s) 177, 241, 351
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 48, 182, 253
AlwI GGATC 1 cut(s) 265
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 80, 177, 180
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
Asp700I GAANNNNTTC 1 cut(s) 282
AsuII TTCGAA 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 92, 164, 167
BcoDI GTCTC 3 cut(s) 48, 182, 253
BfaI CTAG 2 cut(s) 18, 242
BisI GCNGC 4 cut(s) 15, 81, 178, 181
BlsI GCNGC 4 cut(s) 16, 82, 179, 182
BmsI GCATC 2 cut(s) 123, 159
Bpu14I TTCGAA 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 92, 164, 167
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 3 cut(s) 48, 182, 253
BsmBI CGTCTC 2 cut(s) 48, 182
BsnI GGCC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 4 cut(s) 15, 31, 281, 297
BspANI GGCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 236
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 3 cut(s) 48, 182, 253
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 92, 164, 167
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 30, 36
CseI GACGC 1 cut(s) 30
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 139, 297
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 2 cut(s) 48, 182
FaiI YATR 3 cut(s) 207, 264, 303
Fnu4HI GCNGC 4 cut(s) 15, 81, 178, 181
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 15, 81, 178, 181
FspBI CTAG 2 cut(s) 18, 242
GluI GCNGC 4 cut(s) 15, 81, 178, 181
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 224, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 191
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 33, 38, 263
LpnPI CCDG 5 cut(s) 108, 142, 177, 232, 288
Lsp1109I GCAGC 3 cut(s) 92, 164, 167
LweI GCATC 2 cut(s) 123, 159
MaeI CTAG 2 cut(s) 18, 242
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 272
MbiI CCGCTC 1 cut(s) 33
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 308, 333, 356, 388
MnlI CCTC 2 cut(s) 16, 60
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 270
NspV TTCGAA 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 4 cut(s) 16, 82, 179, 182
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 4 cut(s) 15, 81, 178, 181
Sau3AI GATC 1 cut(s) 270
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 23, 138, 161, 179, 194, 243, 353
SfaNI GCATC 2 cut(s) 123, 159
SfuI TTCGAA 1 cut(s) 236
Sse9I AATT 4 cut(s) 308, 333, 356, 388
SsiI CCGC 4 cut(s) 15, 31, 281, 297
SspMI CTAG 2 cut(s) 18, 242
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 46, 65, 236
TasI AATT 4 cut(s) 308, 333, 356, 388
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 30, 43
TseI GCWGC 3 cut(s) 80, 177, 180
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 2 cut(s) 30, 43
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 2 cut(s) 18, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.