Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Forward (+)

88359788 .. 88361478

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCCTTCGCCGCTAGGTCCATGCTCCGCTCCGCCGCGGCCAGAACCACTCTGGGTTCTCGGGTCGCCTCCGCAGCCCGACCCAAACCCGCCGCCGCACCATTCACCATCCCCAAACAGAACAAAAACCCCATCTCTCACCCCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTTGAGACGTTGCTTCCCTACCACACGGCCACAGCCTCTGCATTGCTGACCTCGATGCTCTCCGTCTCGCAACGCTCCTACGGGTGGACCCCTGAAGTGAGTTTCATTTACTTGCGGCGTGCTCAATCTCGTTTTGTTTTGTGTGCATTACAAGTTATGCCGATCTTGGAAGTTGGGGTCAATGAGGTCATAATCAAGGGCAAGACAAGACTAGATGAGGATCAAGCATCAAATATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.3

Weight (kDa)

9.85

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	2 cut(s)	42, 207
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	153, 264
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	179, 250
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	3, 42, 207
ApeKI	GCWGC	3 cut(s)	77, 174, 177
AspS9I	GGNCC	2 cut(s)	21, 267
AsuHPI	GGTGA	2 cut(s)	100, 134
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	21, 267
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	89, 161, 164
BccI	CCATC	2 cut(s)	119, 143
BceAI	ACGGC	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	179, 250
BfaI	CTAG	2 cut(s)	18, 392
BisI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 296
BlsI	GCNGC	9 cut(s)	16, 40, 43, 79, 97, 100, 176, 179, 297
Bme18I	GGWCC	2 cut(s)	21, 267
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	21, 267
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	2 cut(s)	225, 416
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 264
Bse3DI	GCAATG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	153, 264
BseMI	GCAATG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	89, 161, 164
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	5, 44, 209
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	153, 264
BsmAI	GTCTC	2 cut(s)	179, 250
BsmBI	CGTCTC	2 cut(s)	179, 250
BsnI	GGCC	3 cut(s)	5, 44, 209
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	342, 400
BspANI	GGCC	3 cut(s)	5, 44, 209
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	342, 400
BstC8I	GCNNGC	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	345, 403
BstMAI	GTCTC	2 cut(s)	179, 250
BstMBI	GATC	2 cut(s)	342, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 77
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	89, 161, 164
BsuRI	GGCC	3 cut(s)	5, 44, 209
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	21, 267
Cfr42I	CCGCGG	1 cut(s)	42
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	6 cut(s)	5, 44, 80, 174, 209, 215
CviKI_1	RGCY	6 cut(s)	5, 44, 80, 174, 209, 215
DpnI	GATC	2 cut(s)	344, 402
DpnII	GATC	2 cut(s)	342, 400
EaeI	YGGCCR	2 cut(s)	42, 207
EciI	GGCGGA	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	21, 267
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	179, 250
FaeI	CATG	1 cut(s)	28
FaiI	YATR	4 cut(s)	26, 338, 371, 416
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 296
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 296
FspBI	CTAG	2 cut(s)	18, 392
GluI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 296
HaeIII	GGCC	3 cut(s)	5, 44, 209
Hin1II	CATG	1 cut(s)	28
HphI	GGTGA	2 cut(s)	100, 134
Hpy166II	GTNNAC	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	221, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 77
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	342, 400
LmnI	GCTCC	3 cut(s)	33, 38, 260
LpnPI	CCDG	5 cut(s)	41, 58, 139, 174, 285
Lsp1109I	GCAGC	3 cut(s)	89, 161, 164
LweI	GCATC	2 cut(s)	225, 416
MaeI	CTAG	2 cut(s)	18, 392
MaeII	ACGT	1 cut(s)	188
MalI	GATC	2 cut(s)	344, 402
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	342, 400
MhlI	GDGCHC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	16, 82, 226, 241, 358, 391
MspA1I	CMGCKG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	11, 77
NdeII	GATC	2 cut(s)	342, 400
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	269
PkrI	GCNGC	9 cut(s)	16, 40, 43, 79, 97, 100, 176, 179, 297
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	21, 267
PstNI	CAGNNNCTG	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 296
Sau3AI	GATC	2 cut(s)	342, 400
Sau96I	GGNCC	2 cut(s)	21, 267
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	23, 158, 176, 191, 233, 369
SfaNI	GCATC	2 cut(s)	225, 416
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	21, 267
SspMI	CTAG	2 cut(s)	18, 392
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	233
TauI	GCSGC	6 cut(s)	17, 41, 44, 98, 101, 298
TseI	GCWGC	3 cut(s)	77, 174, 177
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	21, 267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	18, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.