Rw5G006560

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000985
Physical Location & Seq
Reverse (-)
6754719 .. 6755247
529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006560.1

Sequence Viewer

Length: 279 bp
ATGTCCTCCTTGGCCGCTAGGTCAGTGCTCCGCTCCACCGCGTCTCGAACCACCCAGCTGCGTTCGAGGCTCGGTTTCGCAGCCAAAACCAAACCACTTATATATGGAAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCATACAGCCACAGCCTCTGCATTACTCACTTCGAAGCTAGAAGTCTCGCAACGCTCCTATGTTTTGATCCCTGAAGGTATAGATTGCCAATTTTCTTTTGACTTTCCGATTCATAATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

9.3

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 15, 31, 39
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 249
AluBI AGCT 3 cut(s) 58, 129, 193
AluI AGCT 3 cut(s) 58, 129, 193
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 48, 134, 205
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 58, 80, 129, 132
AsuII TTCGAA 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 45, 92, 116, 119
BcoDI GTCTC 3 cut(s) 48, 134, 205
BfaI CTAG 2 cut(s) 18, 194
BisI GCNGC 5 cut(s) 15, 59, 81, 130, 133
BlsI GCNGC 5 cut(s) 16, 60, 82, 131, 134
Bpu14I TTCGAA 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 9
BseXI GCAGC 4 cut(s) 45, 92, 116, 119
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 48, 134, 205
BsmBI CGTCTC 2 cut(s) 48, 134
BsnI GGCC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 3 cut(s) 15, 31, 39
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 217
BspT104I TTCGAA 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 188
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 3 cut(s) 48, 134, 205
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 4 cut(s) 45, 92, 116, 119
BsuRI GGCC 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 173
CseI GACGC 1 cut(s) 30
CviJI RGCY 8 cut(s) 14, 58, 70, 83, 129, 164, 170, 193
CviKI_1 RGCY 8 cut(s) 14, 58, 70, 83, 129, 164, 170, 193
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 2 cut(s) 48, 134
FaiI YATR 7 cut(s) 101, 103, 105, 159, 216, 236, 270
Fnu4HI GCNGC 5 cut(s) 15, 59, 81, 130, 133
Fsp4HI GCNGC 5 cut(s) 15, 59, 81, 130, 133
FspBI CTAG 2 cut(s) 18, 194
GluI GCNGC 5 cut(s) 15, 59, 81, 130, 133
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 45, 276
HpyAV CCTTC 2 cut(s) 102, 224
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 143
Kzo9I GATC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 33, 38, 215
LpnPI CCDG 3 cut(s) 68, 129, 240
Lsp1109I GCAGC 4 cut(s) 45, 92, 116, 119
MaeI CTAG 2 cut(s) 18, 194
MaeII ACGT 1 cut(s) 143
MalI GATC 1 cut(s) 224
MbiI CCGCTC 1 cut(s) 33
MboI GATC 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 245, 271
MnlI CCTC 3 cut(s) 16, 60, 181
MspA1I CMGCKG 1 cut(s) 58
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 188
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 5 cut(s) 16, 60, 82, 131, 134
PspFI CCCAGC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 58
SatI GCNGC 5 cut(s) 15, 59, 81, 130, 133
Sau3AI GATC 1 cut(s) 222
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 23, 60, 113, 131, 146, 195, 235
SfuI TTCGAA 1 cut(s) 188
Sse9I AATT 2 cut(s) 245, 271
SsiI CCGC 3 cut(s) 15, 31, 39
SspMI CTAG 2 cut(s) 18, 194
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 46, 65, 188
TasI AATT 2 cut(s) 245, 271
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 265
TscAI CASTG 1 cut(s) 30
TseI GCWGC 4 cut(s) 58, 80, 129, 132
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 30
XspI CTAG 2 cut(s) 18, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.