Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Reverse (-)

5990276 .. 5993438

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCCTCCTTCGCCGCTAGGTCCATGATCCGCTCCGCCGCGGCCAGAACCACTCTGGGTTCTCGGGTCGCCTCCGCAGCCCGACCCAAACCCGCCGCCGCACCATTCACCATCCCCAAACAAAACAAAAACCCCATCTCTCACGCCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCACACAGCCACAGCCTCTGCATTGCTGACCTCGATGCTCTCCGTCTCGCAGCGCTCCTACGGTTGGACCCCTGAAGGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.98

Weight (kDa)

10.52

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	41
AciI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	153, 264, 276
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	179, 250
AlwI	GGATC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	63
Aor51HI	AGCGCT	1 cut(s)	254
AoxI	GGCC	2 cut(s)	3, 42
ApeKI	GCWGC	4 cut(s)	77, 174, 177, 250
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	21, 267
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	21, 267
BbvI	GCAGC	4 cut(s)	89, 161, 164, 262
BccI	CCATC	2 cut(s)	119, 143
BcoDI	GTCTC	2 cut(s)	179, 250
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 251
BlsI	GCNGC	9 cut(s)	16, 40, 43, 79, 97, 100, 176, 179, 252
Bme18I	GGWCC	2 cut(s)	21, 267
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	21, 267
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 264, 276
Bse3DI	GCAATG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	153, 264, 276
BseMI	GCAATG	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	89, 161, 164, 262
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	5, 44
BsiHKCI	CYCGRG	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	153, 264, 276
BsmAI	GTCTC	2 cut(s)	179, 250
BsmBI	CGTCTC	2 cut(s)	179, 250
BsnI	GGCC	2 cut(s)	5, 44
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
BspANI	GGCC	2 cut(s)	5, 44
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	179, 250
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 77
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	89, 161, 164, 262
BsuRI	GGCC	2 cut(s)	5, 44
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	21, 267
Cfr42I	CCGCGG	1 cut(s)	42
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	5, 44, 80, 174, 209, 215, 280
CviKI_1	RGCY	7 cut(s)	5, 44, 80, 174, 209, 215, 280
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	21, 267
Eco47III	AGCGCT	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	179, 250
FaeI	CATG	1 cut(s)	28
FaiI	YATR	1 cut(s)	26
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 251
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 251
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 251
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	5, 44
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HphI	GGTGA	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	19, 269
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 77
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	38, 260
LpnPI	CCDG	4 cut(s)	41, 58, 139, 174
Lsp1109I	GCAGC	4 cut(s)	89, 161, 164, 262
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	188
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	4 cut(s)	16, 82, 226, 241
MspA1I	CMGCKG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	11, 77
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	269
PkrI	GCNGC	9 cut(s)	16, 40, 43, 79, 97, 100, 176, 179, 252
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	21, 267
PstNI	CAGNNNCTG	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	9 cut(s)	15, 39, 42, 78, 96, 99, 175, 178, 251
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	2 cut(s)	21, 267
SetI	ASST	5 cut(s)	23, 158, 176, 191, 233
SfaNI	GCATC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	21, 267
SsiI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
SspMI	CTAG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	233
TauI	GCSGC	5 cut(s)	17, 41, 44, 98, 101
TseI	GCWGC	4 cut(s)	77, 174, 177, 250
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	21, 267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.