Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Forward (+)

29327848 .. 29329042

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCCTCCTTCGCCGCCGCCAGGTCCGTCCTCCGCTCCTCTGCGGCGCGAACCATCGTGTCCTCGAGGCTCGCCTCCGTCGCCAGACCCAAACCAGCCTCCTCAACGTTTCGCACCCCCAAACCAACCCAAAGCCTCTCCGCACCTCGCATTTTCAGGTCGCCCGTGGAGTTGAGCTGCTGCGTGGAGACGATGCTTCCGTACCACACAGCCACAGCCTCTGCATTGCTCACTTCGATGCTCTCCGTCTCTCAGCGCTCCTATGATTGGACCTCCGAAGGTATTCCCTCTTTGTCTATCGAGTTTTCGTTTCATGATTCGGGGGTGATGTTAGATGATCATGGATGGAAGTATTGCCAGGACTTGAAATCAGGCAAGACAAGACTAGATGAGGATCAAGCATCAGATATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

7.75

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	36
AccII	CGCG	1 cut(s)	49
AciI	CCGC	5 cut(s)	15, 18, 34, 44, 141
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	21, 267
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	20, 357
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	182, 253
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	64
Aor51HI	AGCGCT	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	177, 180
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	49, 258
AspS9I	GGNCC	2 cut(s)	24, 270
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	24, 270
BbvI	GCAGC	2 cut(s)	164, 167
BccI	CCATC	2 cut(s)	62, 339
BciT130I	CCWGG	2 cut(s)	22, 359
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	182, 253
BfaI	CTAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
BlsI	GCNGC	5 cut(s)	16, 19, 46, 179, 182
Bme1390I	CCNGG	2 cut(s)	22, 359
Bme18I	GGWCC	2 cut(s)	24, 270
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	24, 270
BmrFI	CCNGG	2 cut(s)	22, 359
BmsI	GCATC	3 cut(s)	183, 228, 410
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 267
Bse3DI	GCAATG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	22, 359
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	21, 267
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	28, 91
BseXI	GCAGC	2 cut(s)	164, 167
Bsh1236I	CGCG	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	21, 267
BsmAI	GTCTC	2 cut(s)	182, 253
BsmBI	CGTCTC	2 cut(s)	182, 253
BsoBI	CYCGRG	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	337, 394
BspACI	CCGC	5 cut(s)	15, 18, 34, 44, 141
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	313
BspPI	GGATC	1 cut(s)	402
BsrBI	CCGCTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	337, 394
Bst2UI	CCWGG	2 cut(s)	22, 359
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	49, 258
BstKTI	GATC	2 cut(s)	340, 397
BstMAI	GTCTC	2 cut(s)	182, 253
BstMBI	GATC	2 cut(s)	337, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	22, 359
BstSCI	CCNGG	2 cut(s)	20, 357
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	164, 167
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	2 cut(s)	49, 258
Cfr13I	GGNCC	2 cut(s)	24, 270
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	2 cut(s)	314, 341
CviJI	RGCY	6 cut(s)	70, 98, 135, 177, 212, 218
CviKI_1	RGCY	6 cut(s)	70, 98, 135, 177, 212, 218
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	339, 396
DpnII	GATC	2 cut(s)	337, 394
Eco47I	GGWCC	2 cut(s)	24, 270
Eco47III	AGCGCT	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	20, 357
Esp3I	CGTCTC	2 cut(s)	182, 253
FaeI	CATG	2 cut(s)	317, 344
FaiI	YATR	4 cut(s)	264, 315, 342, 410
FatI	CATG	2 cut(s)	313, 340
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	48, 257
GluI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
HaeII	RGCGCY	1 cut(s)	259
HhaI	GCGC	2 cut(s)	49, 258
Hin1II	CATG	2 cut(s)	317, 344
Hin6I	GCGC	2 cut(s)	47, 256
HinP1I	GCGC	2 cut(s)	47, 256
HinfI	GANTC	1 cut(s)	317
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	277, 406
Hpy188III	TCNNGA	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	19, 272
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	317, 344
HspAI	GCGC	2 cut(s)	47, 256
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 394
LmnI	GCTCC	2 cut(s)	41, 263
LpnPI	CCDG	8 cut(s)	7, 34, 97, 108, 142, 344, 357, 371
Lsp1109I	GCAGC	2 cut(s)	164, 167
LweI	GCATC	3 cut(s)	183, 228, 410
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	107
MalI	GATC	2 cut(s)	339, 396
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	2 cut(s)	337, 394
MroXI	GAANNNNTTC	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	22, 359
MvaI	CCWGG	2 cut(s)	22, 359
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	337, 394
NlaIII	CATG	2 cut(s)	317, 344
PaeR7I	CTCGAG	1 cut(s)	64
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	16, 19, 46, 179, 182
Psp1406I	AACGTT	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	20, 357
PspGI	CCWGG	2 cut(s)	20, 357
PspPI	GGNCC	2 cut(s)	24, 270
PspXI	VCTCGAGB	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
Sau3AI	GATC	2 cut(s)	337, 394
Sau96I	GGNCC	2 cut(s)	24, 270
ScrFI	CCNGG	2 cut(s)	22, 359
SetI	ASST	7 cut(s)	26, 110, 148, 161, 179, 275, 283
SfaNI	GCATC	3 cut(s)	183, 228, 410
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	24, 270
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SsiI	CCGC	5 cut(s)	15, 18, 34, 44, 141
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	20, 357
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	65, 236, 300
TauI	GCSGC	3 cut(s)	17, 20, 47
TfiI	GAWTC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	177, 180
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	4 cut(s)	16, 67, 189, 235
VpaK11BI	GGWCC	2 cut(s)	24, 270
XhoI	CTCGAG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.