Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Forward (+)

26100375 .. 26101895

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCGTCCTTCGCCGCCGCCAGGTCCGTCCTCCGCTCCTCTGCGGCTCGAACCACCGTGGCCTCGAGGGTTGCCTCCGCCCCCAGACCCAAACCAGCCTCCTCACCATTTCGCGTCCCCAAACCAACCCAAAGCCTGTCGGCTCCTCGCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGATGCTTCCGTACCACACAGCCACAGCCTCTGCATTGCTCACTTCGATGCTCTCCGTCTCTCAGCGCTCCTATGGTTGGACCCCCGAAGATTGCAATGATGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

10.6

Weight (kDa)

9.74

Isoelectric Point (pI)

74.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	36
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	15, 18, 34, 44, 78
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	21, 267
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	182, 253
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	64
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	177, 180
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	24, 270
AsuHPI	GGTGA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	24, 270
BbvI	GCAGC	2 cut(s)	164, 167
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	182, 253
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
BlsI	GCNGC	5 cut(s)	16, 19, 46, 179, 182
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	24, 270
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	24, 270
BmiI	GGNNCC	2 cut(s)	144, 272
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	183, 228
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 267
Bse3DI	GCAATG	2 cut(s)	224, 292
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	21, 267
BseMI	GCAATG	2 cut(s)	224, 292
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	3 cut(s)	28, 91, 135
BseXI	GCAGC	2 cut(s)	164, 167
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	21, 267
BsmAI	GTCTC	2 cut(s)	182, 253
BsmBI	CGTCTC	2 cut(s)	182, 253
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	64
BspACI	CCGC	5 cut(s)	15, 18, 34, 44, 78
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	144, 272
BsrBI	CCGCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	224, 292
BssECI	CCNNGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	182, 253
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	164, 167
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	24, 270
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	8 cut(s)	47, 62, 98, 135, 143, 177, 212, 218
CviKI_1	RGCY	8 cut(s)	47, 62, 98, 135, 143, 177, 212, 218
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	24, 270
Eco47III	AGCGCT	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	20
Esp3I	CGTCTC	2 cut(s)	182, 253
FaiI	YATR	2 cut(s)	264, 298
FaqI	GGGAC	1 cut(s)	101
Fnu4HI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
Fsp4HI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	224, 285
HpyF3I	CTNAG	1 cut(s)	252
HspAI	GCGC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	41, 148, 263
LpnPI	CCDG	7 cut(s)	7, 34, 97, 108, 142, 149, 177
Lsp1109I	GCAGC	2 cut(s)	164, 167
LweI	GCATC	2 cut(s)	183, 228
MbiI	CCGCTC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	9 cut(s)	41, 49, 60, 73, 85, 109, 112, 156, 229
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	144, 272
PaeR7I	CTCGAG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	16, 19, 46, 179, 182
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	144, 272
PspPI	GGNCC	2 cut(s)	24, 270
PspXI	VCTCGAGB	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	5 cut(s)	15, 18, 45, 178, 181
Sau96I	GGNCC	2 cut(s)	24, 270
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	3 cut(s)	26, 161, 179
SfaNI	GCATC	2 cut(s)	183, 228
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	24, 270
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SsiI	CCGC	5 cut(s)	15, 18, 34, 44, 78
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	49, 65, 236
TauI	GCSGC	3 cut(s)	17, 20, 47
TseI	GCWGC	2 cut(s)	177, 180
TspGWI	ACGGA	3 cut(s)	16, 189, 235
VpaK11BI	GGWCC	2 cut(s)	24, 270
XhoI	CTCGAG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.