Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Reverse (-)

14318964 .. 14320714

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33847.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCCGCCGCCAGATCCGTCTTCCGTTCCGGTGTTGGCCGAGCCGCCGTTGCCGCGTTAAGGTCGACAAAGCCTATGCCGTCTTCTGCGCGGTCTTCGTTTAAGTTGCCTAAACAGAGTCCTCTCTCTCACCGCATTTTCAGATCTCCGGTGGAATTGAGCTGCTGCGTCGAGACGATGCTACCGTACCACACGGCCACTGCTTCTGCTTTGCTCAATTCGATGCTTTCAGTTTCAGGGCGCTCCATTTGGACTTTCCAAGATTGCATCGATGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.03

Weight (kDa)

10.06

Isoelectric Point (pI)

78.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	2 cut(s)	56, 91
AciI	CCGC	6 cut(s)	6, 9, 45, 54, 91, 133
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	2 cut(s)	37, 195
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	37, 195
ApeKI	GCWGC	2 cut(s)	162, 165
AspLEI	GCGC	2 cut(s)	91, 243
AsuHPI	GGTGA	1 cut(s)	122
BbsI	GAAGAC	3 cut(s)	13, 75, 87
BbvI	GCAGC	2 cut(s)	149, 152
BceAI	ACGGC	3 cut(s)	32, 64, 210
BcoDI	GTCTC	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	244
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	9, 45, 54, 163, 166
BlsI	GCNGC	5 cut(s)	10, 46, 55, 164, 167
BmsI	GCATC	4 cut(s)	168, 213, 265, 276
BpiI	GAAGAC	3 cut(s)	13, 75, 87
Bsa29I	ATCGAT	1 cut(s)	270
BsaWI	WCCGGW	2 cut(s)	29, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	149, 152
Bsh1236I	CGCG	2 cut(s)	56, 91
BshFI	GGCC	2 cut(s)	39, 197
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	30, 149
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	39, 197
Bsp143I	GATC	2 cut(s)	14, 143
BspACI	CCGC	6 cut(s)	6, 9, 45, 54, 91, 133
BspANI	GGCC	2 cut(s)	39, 197
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	56, 91
BspPI	GGATC	1 cut(s)	9
BssMI	GATC	2 cut(s)	14, 143
Bst4CI	ACNGT	1 cut(s)	186
BstFNI	CGCG	2 cut(s)	56, 91
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	91, 243
BstKTI	GATC	2 cut(s)	17, 146
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	14, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 53
BstUI	CGCG	2 cut(s)	56, 91
BstV1I	GCAGC	2 cut(s)	149, 152
BstV2I	GAAGAC	3 cut(s)	13, 75, 87
BstX2I	RGATCY	2 cut(s)	14, 143
BstYI	RGATCY	2 cut(s)	14, 143
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	39, 197
BsuTUI	ATCGAT	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	2 cut(s)	91, 243
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	5 cut(s)	39, 44, 73, 162, 197
CviKI_1	RGCY	5 cut(s)	39, 44, 73, 162, 197
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	2 cut(s)	16, 145
DpnII	GATC	2 cut(s)	14, 143
EaeI	YGGCCR	2 cut(s)	37, 195
EcoT22I	ATGCAT	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	282
FaiI	YATR	2 cut(s)	77, 280
FatI	CATG	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	5 cut(s)	9, 45, 54, 163, 166
Fsp4HI	GCNGC	5 cut(s)	9, 45, 54, 163, 166
GlaI	GCGC	2 cut(s)	90, 242
GluI	GCNGC	5 cut(s)	9, 45, 54, 163, 166
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	39, 197
HapII	CCGG	2 cut(s)	30, 149
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	91, 243
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	2 cut(s)	89, 241
HinP1I	GCGC	2 cut(s)	89, 241
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	30, 149
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	267, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 53
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	2 cut(s)	89, 241
Kzo9I	GATC	2 cut(s)	14, 143
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	4 cut(s)	25, 43, 162, 222
Lsp1109I	GCAGC	2 cut(s)	149, 152
LweI	GCATC	4 cut(s)	168, 213, 265, 276
MalI	GATC	2 cut(s)	16, 145
MboI	GATC	2 cut(s)	14, 143
MboII	GAAGA	3 cut(s)	13, 75, 87
MflI	RGATCY	2 cut(s)	14, 143
MluCI	AATT	2 cut(s)	155, 217
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	2 cut(s)	59, 102
MspI	CCGG	2 cut(s)	30, 149
MvnI	CGCG	2 cut(s)	56, 91
MwoI	GCNNNNNNNGC	2 cut(s)	50, 53
NdeII	GATC	2 cut(s)	14, 143
NlaIII	CATG	1 cut(s)	282
NmeAIII	GCCGAG	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	10, 46, 55, 164, 167
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	14, 143
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	59, 102
SatI	GCNGC	5 cut(s)	9, 45, 54, 163, 166
Sau3AI	GATC	2 cut(s)	14, 143
SchI	GAGTC	1 cut(s)	127
SetI	ASST	2 cut(s)	65, 164
SfaNI	GCATC	4 cut(s)	168, 213, 265, 276
Sse9I	AATT	2 cut(s)	155, 217
SsiI	CCGC	6 cut(s)	6, 9, 45, 54, 91, 133
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	4 cut(s)	65, 171, 221, 270
TasI	AATT	2 cut(s)	155, 217
TauI	GCSGC	3 cut(s)	11, 47, 56
Tru1I	TTAA	2 cut(s)	59, 102
Tru9I	TTAA	2 cut(s)	59, 102
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	2 cut(s)	162, 165
TspGWI	ACGGA	2 cut(s)	7, 14
TspRI	CASTG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.