Rh5CG078400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000985
Physical Location & Seq
Reverse (-)
5893695 .. 5894368
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG078400.1

Sequence Viewer

Length: 288 bp
ATGTCCTCCTTGGCCGCTAGGTCAGTGCTCCGCTCCACCGCGTCTCGAACCACCCAGCTGCGTTCGAGGCTCGGTTTCGCAGCCAAAACCAAACCAGTCGCCTCACCCTTTAGCATCCCCAAACAAGACCAGAACCTACTCTCTCATCGCATCTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCATACAGCCACAGCCTCTGCATTACTCACTTCGAAGCTAGAAGTCTCGCAACGCTCCTATGTTTTGATCCCTGAAGGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.38

Weight (kDa)

10.05

Isoelectric Point (pI)

73.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 15, 31, 39
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 139
AluBI AGCT 3 cut(s) 58, 177, 241
AluI AGCT 3 cut(s) 58, 177, 241
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 48, 182, 253
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 58, 80, 177, 180
AsuHPI GGTGA 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 45, 92, 164, 167
BcoDI GTCTC 3 cut(s) 48, 182, 253
BfaI CTAG 2 cut(s) 18, 242
BisI GCNGC 5 cut(s) 15, 59, 81, 178, 181
BlsI GCNGC 5 cut(s) 16, 60, 82, 179, 182
BmsI GCATC 2 cut(s) 123, 159
Bpu14I TTCGAA 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 4 cut(s) 45, 92, 164, 167
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 48, 182, 253
BsmBI CGTCTC 2 cut(s) 48, 182
BsnI GGCC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 3 cut(s) 15, 31, 39
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 236
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 3 cut(s) 48, 182, 253
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 4 cut(s) 45, 92, 164, 167
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 221
CseI GACGC 1 cut(s) 30
CviJI RGCY 8 cut(s) 14, 58, 70, 83, 177, 212, 218, 241
CviKI_1 RGCY 8 cut(s) 14, 58, 70, 83, 177, 212, 218, 241
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 2 cut(s) 48, 182
FaiI YATR 2 cut(s) 207, 264
Fnu4HI GCNGC 5 cut(s) 15, 59, 81, 178, 181
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 5 cut(s) 15, 59, 81, 178, 181
FspBI CTAG 2 cut(s) 18, 242
GluI GCNGC 5 cut(s) 15, 59, 81, 178, 181
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 14
HgaI GACGC 1 cut(s) 30
HphI GGTGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 191
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 33, 38, 263
LpnPI CCDG 5 cut(s) 68, 108, 142, 143, 177
Lsp1109I GCAGC 4 cut(s) 45, 92, 164, 167
LweI GCATC 2 cut(s) 123, 159
MaeI CTAG 2 cut(s) 18, 242
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 272
MbiI CCGCTC 1 cut(s) 33
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 4 cut(s) 16, 60, 112, 229
MspA1I CMGCKG 1 cut(s) 58
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 1 cut(s) 270
NspV TTCGAA 1 cut(s) 236
PkrI GCNGC 5 cut(s) 16, 60, 82, 179, 182
PspFI CCCAGC 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 58
SatI GCNGC 5 cut(s) 15, 59, 81, 178, 181
Sau3AI GATC 1 cut(s) 270
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 23, 60, 138, 161, 179, 194, 243
SfaNI GCATC 2 cut(s) 123, 159
SfuI TTCGAA 1 cut(s) 236
SsiI CCGC 3 cut(s) 15, 31, 39
SspMI CTAG 2 cut(s) 18, 242
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 46, 65, 236
TauI GCSGC 1 cut(s) 17
TscAI CASTG 1 cut(s) 30
TseI GCWGC 4 cut(s) 58, 80, 177, 180
TspRI CASTG 1 cut(s) 30
XspI CTAG 2 cut(s) 18, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.