AT1G28395

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000985
Physical Location & Seq
Reverse (-)
9969246 .. 9971681
2436 bp
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UTR
Exon/CDS
Intron
AT1G28395.2

Sequence Viewer

Length: 288 bp
ATGTCCGCCGCAAGGTCCGTGTTCCGCTCCGCCGCAAGCCGAGCATCGTCCACCGCATTTAGATTCTCCGCCGGACCCAAGCCTATGCCGTCATCGGCACGGACCGCGTTTCGGATGCCTAAACAGAGTCCTCTAACAAATCGCATTTTCAGATCTCCGGTAGAACTAAGCTGTTGCGTGGAGACGATGCTCCCTTACCACACTGCCACTGCTTCCGCTTTGCTCAATTCAATGCTCTCAGTTTCACGCCGTGGTTGGATCGTTGATGGGCTAGACGAGACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.37

Weight (kDa)

11.38

Isoelectric Point (pI)

72.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 107
AciI CCGC 9 cut(s) 6, 9, 25, 30, 33, 54, 69, 105, 216
AclWI GGATC 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 12, 111
AgsI TTSAA 1 cut(s) 231
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 176, 272
AlwI GGATC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 15, 74, 102
AvaII GGWCC 3 cut(s) 15, 74, 102
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 73, 234
BcoDI GTCTC 2 cut(s) 176, 272
BfaI CTAG 2 cut(s) 272, 282
BglII AGATCT 1 cut(s) 152
BisI GCNGC 2 cut(s) 9, 33
BlsI GCNGC 2 cut(s) 10, 34
Bme18I GGWCC 3 cut(s) 15, 74, 102
BmgT120I GGNCC 3 cut(s) 15, 74, 102
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 3 cut(s) 53, 105, 177
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 111
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 12, 111
BseMII CTCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 72, 158
BslI CCNNNNNNNGG 2 cut(s) 12, 111
BsmAI GTCTC 2 cut(s) 176, 272
BsmBI CGTCTC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 152, 258
BspACI CCGC 9 cut(s) 6, 9, 25, 30, 33, 54, 69, 105, 216
BspCNI CTCAG 1 cut(s) 251
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 152, 258
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 167, 238
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 2 cut(s) 155, 261
BstMAI GTCTC 2 cut(s) 176, 272
BstMBI GATC 2 cut(s) 152, 258
BstMWI GCNNNNNNNGC 2 cut(s) 41, 104
BstUI CGCG 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 120
BtsI GCAGTG 2 cut(s) 201, 207
BtsIMutI CAGTG 2 cut(s) 201, 207
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 3 cut(s) 15, 74, 102
CpoI CGGWCCG 1 cut(s) 102
CspI CGGWCCG 1 cut(s) 102
CviJI RGCY 4 cut(s) 39, 82, 171, 271
CviKI_1 RGCY 4 cut(s) 39, 82, 171, 271
DdeI CTNAG 2 cut(s) 167, 238
DpnI GATC 2 cut(s) 154, 260
DpnII GATC 2 cut(s) 152, 258
DraIII CACNNNGTG 1 cut(s) 251
EciI GGCGGA 2 cut(s) 19, 58
Eco47I GGWCC 3 cut(s) 15, 74, 102
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 9, 33
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 9, 33
FspBI CTAG 2 cut(s) 272, 282
GluI GCNGC 2 cut(s) 9, 33
HapII CCGG 2 cut(s) 72, 158
HinfI GANTC 2 cut(s) 63, 127
HpaII CCGG 2 cut(s) 72, 158
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 114, 152
Hpy8I GTNNAC 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 104
HpyF3I CTNAG 2 cut(s) 167, 238
Kzo9I GATC 2 cut(s) 152, 258
LmnI GCTCC 2 cut(s) 32, 195
LpnPI CCDG 2 cut(s) 85, 171
LweI GCATC 3 cut(s) 53, 105, 177
MaeI CTAG 2 cut(s) 272, 282
MalI GATC 2 cut(s) 154, 260
MbiI CCGCTC 1 cut(s) 27
MboI GATC 2 cut(s) 152, 258
MflI RGATCY 1 cut(s) 152
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 1 cut(s) 141
MspI CCGG 2 cut(s) 72, 158
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 41, 104
NdeII GATC 2 cut(s) 152, 258
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 65
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 10, 34
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 3 cut(s) 15, 74, 102
PsuI RGATCY 1 cut(s) 152
Rsr2I CGGWCCG 1 cut(s) 102
RsrII CGGWCCG 1 cut(s) 102
SatI GCNGC 2 cut(s) 9, 33
Sau3AI GATC 2 cut(s) 152, 258
Sau96I GGNCC 3 cut(s) 15, 74, 102
SchI GAGTC 1 cut(s) 136
SetI ASST 2 cut(s) 17, 173
SfaNI GCATC 3 cut(s) 53, 105, 177
SinI GGWCC 3 cut(s) 15, 74, 102
Sse9I AATT 1 cut(s) 226
SsiI CCGC 9 cut(s) 6, 9, 25, 30, 33, 54, 69, 105, 216
SspMI CTAG 2 cut(s) 272, 282
TasI AATT 1 cut(s) 226
TauI GCSGC 2 cut(s) 11, 35
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 2 cut(s) 208, 214
TspGWI ACGGA 2 cut(s) 7, 115
TspRI CASTG 2 cut(s) 208, 214
VpaK11BI GGWCC 3 cut(s) 15, 74, 102
XspI CTAG 2 cut(s) 272, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.