Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Reverse (-)

2480901 .. 2484288

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051800.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTTCCTTCGCCGCCAGGTCTGTCCTCCGCTCCACCGCGGCTCGAGCCACCGTTGGATCGAGGCTCGCTTCCGCCGCCAGACCCAAACCAGCCTCCTCGCCATTTCGCATCCCCAAACTAAACCAAAGCTCCACCTCTCCTCGCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGTGTGGAGACGATGCTTCCGTACCACACAGCCACAGCCTCTGCATTGCTCACTTCGATGCTCTCTGTCTCTCAGCGCTCCTACGGTTGGACCCCTGAAGGGCAAGACAAGACTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.55

Weight (kDa)

11.18

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	15, 31, 39, 41, 75, 78
AclWI	GGATC	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	264, 276
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	132, 174
AluI	AGCT	2 cut(s)	132, 174
Alw26I	GTCTC	2 cut(s)	179, 250
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	179, 250
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	4 cut(s)	15, 42, 78, 175
BlsI	GCNGC	4 cut(s)	16, 43, 79, 176
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	3 cut(s)	120, 180, 225
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 276
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	264, 276
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	88, 132
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	264, 276
BsmAI	GTCTC	2 cut(s)	179, 250
BsmBI	CGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	6 cut(s)	15, 31, 39, 41, 75, 78
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	55, 263
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	179, 250
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 47, 77
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	267
Cfr42I	CCGCGG	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	9 cut(s)	5, 44, 50, 67, 95, 132, 174, 209, 215
CviKI_1	RGCY	9 cut(s)	5, 44, 50, 67, 95, 132, 174, 209, 215
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	179
Fnu4HI	GCNGC	4 cut(s)	15, 42, 78, 175
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	15, 42, 78, 175
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	4 cut(s)	15, 42, 78, 175
HaeII	RGCGCY	1 cut(s)	256
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	19, 269
HpyCH4III	ACNGT	2 cut(s)	55, 263
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 47, 77
HpyF3I	CTNAG	1 cut(s)	249
HspAI	GCGC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	3 cut(s)	38, 137, 260
LpnPI	CCDG	7 cut(s)	4, 31, 94, 105, 139, 174, 285
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	3 cut(s)	120, 180, 225
MaeI	CTAG	1 cut(s)	291
MalI	GATC	1 cut(s)	61
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	37, 245
MnlI	CCTC	7 cut(s)	38, 57, 106, 109, 148, 153, 226
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	11, 47, 77
NdeII	GATC	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	269
PaeR7I	CTCGAG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	16, 43, 79, 176
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	267
PspXI	VCTCGAGB	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	233
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	4 cut(s)	15, 42, 78, 175
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	5 cut(s)	23, 134, 140, 158, 176
SfaNI	GCATC	3 cut(s)	120, 180, 225
Sfr274I	CTCGAG	1 cut(s)	45
Sfr303I	CCGCGG	1 cut(s)	42
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
SsiI	CCGC	6 cut(s)	15, 31, 39, 41, 75, 78
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	55, 263
TaqI	TCGA	3 cut(s)	46, 62, 233
TauI	GCSGC	3 cut(s)	17, 44, 80
TseI	GCWGC	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	267
XhoI	CTCGAG	1 cut(s)	45
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.