Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000985

Physical Location & Seq

Genomic Coordinates Reverse (-)

5633930 .. 5637199

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCTCCTTCGCCGCTAGGTCCATGCTCCGCTCCGCCGCGGCCAGAACCACTCTGGGTTCTCGGGTCGCCTCCGCAACCCGACCCAAACCCGCCGCCGCACCATTCACCATCCCCAAACAAAACAAAAACCCCATCTCTCACGCCATTTTCAGGTCGCCTGTGGAGTTGAGCTGCTGCGTGGAGACGTTGCTTCCCTACCACACAGCCACAGCCTCTGCATTGCTGACCTCGATGCTCTCCGTCTCGCAACGCTCCTACGGTTGGACCCCTGAAGGTATTCCCTCTTTTGCATTCGAATTGATTTTGTTGGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.34

Weight (kDa)

9.89

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT1G28395 AT2G33847 AT2G33847
fragaria_vesca	FvH4_3g02420 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_3g08700 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460 FvH4_5g21460
malus_domestica	MD05G1310800.v1.1 MD10G1289900.v1.1
prunus_persica	Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1 Prupe.4G051800_v2.0.a1
pyrus_communis	pycom05g28710 pycom10g24220
rosa_chinensis	RchiOBHm_Chr5g0009081
rosa_multiflora	Rmu_sc0002034.1_g000006 Rmu_sc0002034.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066900 Rroxscaffold_1G00066920 Rroxscaffold_1G00069900
rosa_rugosa	Rorug04G0441000
rosa_samantha	Rh5AG070200 Rh5AG070400 Rh5BG067100 Rh5BG067200 Rh5CG078400 Rh5CG078600 Rh5DG066600
rosa_wichuraiana	Rw5G006560 Rw5G006570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	41
AciI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	153, 264
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	179, 250
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	2 cut(s)	3, 42
ApeKI	GCWGC	2 cut(s)	174, 177
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	21, 267
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	21, 267
BbvI	GCAGC	2 cut(s)	161, 164
BccI	CCATC	2 cut(s)	119, 143
BcoDI	GTCTC	2 cut(s)	179, 250
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	7 cut(s)	15, 39, 42, 96, 99, 175, 178
BlsI	GCNGC	7 cut(s)	16, 40, 43, 97, 100, 176, 179
Bme18I	GGWCC	2 cut(s)	21, 267
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	21, 267
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 264
Bse3DI	GCAATG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	153, 264
BseMI	GCAATG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	161, 164
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	5, 44
BsiHKCI	CYCGRG	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	153, 264
BsmAI	GTCTC	2 cut(s)	179, 250
BsmBI	CGTCTC	2 cut(s)	179, 250
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	5, 44
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	297
BspACI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
BspANI	GGCC	2 cut(s)	5, 44
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	297
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	41
BstMAI	GTCTC	2 cut(s)	179, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	161, 164
BsuRI	GGCC	2 cut(s)	5, 44
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	21, 267
Cfr42I	CCGCGG	1 cut(s)	42
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	5 cut(s)	5, 44, 174, 209, 215
CviKI_1	RGCY	5 cut(s)	5, 44, 174, 209, 215
EaeI	YGGCCR	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	21, 267
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	179, 250
FaeI	CATG	1 cut(s)	28
FaiI	YATR	1 cut(s)	26
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	7 cut(s)	15, 39, 42, 96, 99, 175, 178
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	7 cut(s)	15, 39, 42, 96, 99, 175, 178
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	7 cut(s)	15, 39, 42, 96, 99, 175, 178
HaeIII	GGCC	2 cut(s)	5, 44
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	19, 269
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	221, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	33, 38, 260
LpnPI	CCDG	5 cut(s)	41, 58, 139, 174, 285
Lsp1109I	GCAGC	2 cut(s)	161, 164
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	188
MbiI	CCGCTC	1 cut(s)	33
MluCI	AATT	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	245, 291
MnlI	CCTC	5 cut(s)	16, 82, 226, 241, 295
MroXI	GAANNNNTTC	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	297
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	7 cut(s)	16, 40, 43, 97, 100, 176, 179
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	21, 267
PstNI	CAGNNNCTG	1 cut(s)	218
SacII	CCGCGG	1 cut(s)	42
SatI	GCNGC	7 cut(s)	15, 39, 42, 96, 99, 175, 178
Sau96I	GGNCC	2 cut(s)	21, 267
SetI	ASST	6 cut(s)	23, 158, 176, 191, 233, 280
SfaNI	GCATC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	297
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	21, 267
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	9 cut(s)	15, 31, 36, 39, 41, 75, 93, 96, 99
SspMI	CTAG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	233, 297
TasI	AATT	1 cut(s)	299
TauI	GCSGC	5 cut(s)	17, 41, 44, 98, 101
TfiI	GAWTC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	174, 177
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	21, 267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.