Rh5AG070500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012590
Physical Location & Seq
Reverse (-)
5933087 .. 5935491
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG070500.1

Sequence Viewer

Length: 420 bp
ATGCATCATGGATGGCCTCTAGGGCTCGAGATTATGAGTTTAAGGCTTAGACTGGGGGAGAGCTTACCAGCTGCTGTTATAAGACACCATGTACCTTCTACTAGTTTCACCTCATTTTCTTCTTCAAACCTCGACACTGAGTCTACAGCATCCTTTTTCCAAGACCACAGCATGTCACTAGGCCGGCTGATTGGCATTCGAACCAACGATAGAGGGCGCTTGTACTACCCAAATCCAACTAGATTCGAAGAACATGACAGGGTTTCTTTAAGAGCTAGTTCACGAAATTCTGATGTCTCCAGAAGACATCAAGTAGACATGTCTAGACGGATTTGCTTACCGCTGCTGCTTGGTGCTCTTGTAAAGATGAGCAGGAGTAAGAACAAGTCTAAGAAGCCAAAGTTTGAAGGCAAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

10.87

Isoelectric Point (pI)

69.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AccI GTMKAC 2 cut(s) 143, 315
AciI CCGC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 2 cut(s) 93, 224
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 126, 407
AhdI GACNNNNNGTC 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 101
AluBI AGCT 3 cut(s) 63, 71, 275
AluI AGCT 3 cut(s) 63, 71, 275
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 14, 181
ApeKI GCWGC 3 cut(s) 71, 343, 346
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 2 cut(s) 199, 246
AvaI CYCGRG 1 cut(s) 26
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 58, 330, 333
BccI CCATC 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 301
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 6 cut(s) 20, 102, 179, 240, 276, 324
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 3 cut(s) 72, 344, 347
BlsI GCNGC 3 cut(s) 73, 345, 348
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 13, 158
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 283
Bpu14I TTCGAA 2 cut(s) 199, 246
Bse118I RCCGGY 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 17, 149
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 58, 330, 333
BshFI GGCC 2 cut(s) 16, 183
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 16, 183
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 2 cut(s) 199, 246
Bsp1286I GDGCHC 2 cut(s) 27, 358
BspACI CCGC 1 cut(s) 341
BspANI GGCC 2 cut(s) 16, 183
BspCNI CTCAG 1 cut(s) 130
BspT104I TTCGAA 2 cut(s) 199, 246
BsrFI RCCGGY 1 cut(s) 183
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 183
BstBI TTCGAA 2 cut(s) 199, 246
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 47, 138, 390
BstF5I GGATG 2 cut(s) 17, 149
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 175, 322
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 58, 330, 333
BstV2I GAAGAC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 16, 183
BtsCI GGATG 2 cut(s) 17, 149
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 183
Csp6I GTAC 2 cut(s) 92, 223
CviAII CATG 5 cut(s) 8, 89, 172, 254, 319
CviJI RGCY 9 cut(s) 16, 25, 46, 63, 71, 183, 187, 275, 397
CviKI_1 RGCY 9 cut(s) 16, 25, 46, 63, 71, 183, 187, 275, 397
CviQI GTAC 2 cut(s) 92, 223
DdeI CTNAG 3 cut(s) 47, 138, 390
DriI GACNNNNNGTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 5 cut(s) 11, 92, 175, 257, 322
FaiI YATR 7 cut(s) 9, 35, 80, 90, 173, 255, 320
FatI CATG 5 cut(s) 7, 88, 171, 253, 318
FblI GTMKAC 2 cut(s) 143, 315
Fnu4HI GCNGC 3 cut(s) 72, 344, 347
FokI GGATG 2 cut(s) 24, 136
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 72, 344, 347
FspBI CTAG 6 cut(s) 20, 102, 179, 240, 276, 324
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 72, 344, 347
GsuI CTGGAG 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 2 cut(s) 16, 183
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 219
Hin1II CATG 5 cut(s) 11, 92, 175, 257, 322
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 2 cut(s) 140, 243
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 144, 281, 316
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 4 cut(s) 28, 282, 300, 324
Hpy8I GTNNAC 3 cut(s) 144, 281, 316
HpyAV CCTTC 2 cut(s) 105, 401
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 47, 138, 390
Hsp92II CATG 5 cut(s) 11, 92, 175, 257, 322
HspAI GCGC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 183
KroNI GCCGGC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 38, 81, 197, 244, 313, 358
Lsp1109I GCAGC 3 cut(s) 58, 330, 333
LweI GCATC 2 cut(s) 13, 158
MaeI CTAG 6 cut(s) 20, 102, 179, 240, 276, 324
MaeIII GTNAC 1 cut(s) 174
MboII GAAGA 4 cut(s) 111, 114, 260, 315
MhlI GDGCHC 2 cut(s) 27, 358
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 4 cut(s) 27, 121, 140, 206
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 183
MseI TTAA 2 cut(s) 41, 269
MspA1I CMGCKG 2 cut(s) 71, 343
MspI CCGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 22
NaeI GCCGGC 1 cut(s) 185
NgoMIV GCCGGC 1 cut(s) 183
NlaIII CATG 5 cut(s) 11, 92, 175, 257, 322
NmuCI GTSAC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 175, 322
NspV TTCGAA 2 cut(s) 199, 246
PaeR7I CTCGAG 1 cut(s) 26
PciI ACATGT 1 cut(s) 318
PctI GAATGC 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 3 cut(s) 73, 345, 348
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PscI ACATGT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 93, 224
RsaNI GTAC 2 cut(s) 92, 223
SaqAI TTAA 2 cut(s) 41, 269
SatI GCNGC 3 cut(s) 72, 344, 347
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 2 cut(s) 27, 358
SetI ASST 6 cut(s) 65, 73, 97, 113, 132, 277
SfaNI GCATC 2 cut(s) 13, 158
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 26
SfuI TTCGAA 2 cut(s) 199, 246
SlaI CTCGAG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 341
SspMI CTAG 6 cut(s) 20, 102, 179, 240, 276, 324
TaqI TCGA 4 cut(s) 27, 132, 199, 246
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 2 cut(s) 41, 269
Tru9I TTAA 2 cut(s) 41, 269
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 3 cut(s) 71, 343, 346
Tsp45I GTSAC 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 2 cut(s) 175, 322
XhoI CTCGAG 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 143, 315
XspI CTAG 6 cut(s) 20, 102, 179, 240, 276, 324
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.