FvH4_3g13900

Class I heat shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016287
Physical Location & Seq
Forward (+)
8359201 .. 8360056
856 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13900.t1

Sequence Viewer

Length: 453 bp
ATGTCCCTCTTGCAATCTCTCTTGGATCCTTCCACAGTTTTAAGCTCAGATGCGGGTAACATTACTCACATGGATTGGAAGGAAACCTCGAACTCCCACGTTTTCGAAATTGATCTTCCTGGCCTTACCAAAGAGGACGTGAAGCTTGAAGTGCATGAAGGCAGAGTTCTTCATGTTAGCGCAGAGAGAAAGGATGAAGAGCCTCCTGATCTGAAGGTTAAGGAGACATGGCACTGCAGGGAGAGAACCAGTGGCAGCTTCTCAAGGCGTTTCCGGTTGCCTGAGAATGCCAAGGTTGATGAGATCAAGGCTTCAATGCGTGATGGAGTATTAATCATTACAGTGCCAAAGGAAGACTTGAAGAAAAAGCGTAAACACAAACGAGTTGAAATCTCCGGGGATGAAGAGCACGTTTCTAAAGGACTCGGTCGTTTCGTGTGCTGCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

151

Amino Acids

17.09

Weight (kDa)

7.06

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 25 - 132 1.5e-27 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13900
malus_domestica MD05G1240300.v1.1 MD10G1218300.v1.1
prunus_persica Prupe.4G125800_v2.0.a1
pyrus_communis pycom05g21630
rosa_chinensis RchiOBHm_Chr5g0023111
rosa_laevigata RLG00000032699
rosa_roxburghii Rroxscaffold_1G00056240
rosa_rugosa Rorug05G0077200
rosa_samantha Rh5AG163300 Rh5BG162600 Rh5CG177500 Rh5DG163900
rosa_wichuraiana Rw5G014730 Rw5G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 20, 33
AcuI CTGAAG 1 cut(s) 233
AgsI TTSAA 4 cut(s) 149, 315, 361, 389
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 45, 145, 258
AluI AGCT 3 cut(s) 45, 145, 258
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 20, 33
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 255, 441
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 397
AsuII TTCGAA 1 cut(s) 105
BamHI GGATCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 267, 428
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 2 cut(s) 256, 442
BlsI GCNGC 2 cut(s) 257, 443
Bme1390I CCNGG 2 cut(s) 120, 397
BmgBI CACGTC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 120, 397
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 291, 396
BsaWI WCCGGW 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 291, 396
BseGI GGATG 2 cut(s) 199, 406
BseMII CTCAG 2 cut(s) 60, 273
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 267, 428
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 274, 396
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 4 cut(s) 25, 112, 208, 303
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 59, 274
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 2 cut(s) 20, 33
BspQI GCTCTTC 2 cut(s) 192, 399
BspT104I TTCGAA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 291, 396
BssMI GATC 4 cut(s) 25, 112, 208, 303
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 37, 343
Bst6I CTCTTC 2 cut(s) 192, 399
BstBI TTCGAA 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 46, 282
BstF5I GGATG 2 cut(s) 199, 406
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 28, 115, 211, 306
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 4 cut(s) 25, 112, 208, 303
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 395
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 267, 428
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 123
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 199, 406
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 256, 348
CfoI GCGC 1 cut(s) 182
CviAII CATG 4 cut(s) 70, 155, 173, 228
CviJI RGCY 6 cut(s) 45, 123, 145, 202, 258, 311
CviKI_1 RGCY 6 cut(s) 45, 123, 145, 202, 258, 311
DdeI CTNAG 2 cut(s) 46, 282
DpnI GATC 4 cut(s) 27, 114, 210, 305
DpnII GATC 4 cut(s) 25, 112, 208, 303
Eam1104I CTCTTC 2 cut(s) 192, 399
EarI CTCTTC 2 cut(s) 192, 399
Eco130I CCWWGG 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 4 cut(s) 73, 158, 176, 231
FaiI YATR 5 cut(s) 71, 156, 174, 229, 451
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 4 cut(s) 69, 154, 172, 227
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 256, 442
FokI GGATG 2 cut(s) 206, 413
Fsp4HI GCNGC 2 cut(s) 256, 442
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 256, 442
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 274, 396
HhaI GCGC 1 cut(s) 182
Hin1II CATG 4 cut(s) 73, 158, 176, 231
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 423
HpaII CCGG 2 cut(s) 274, 396
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 49, 213
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 39, 73, 152, 208
HpyCH4III ACNGT 2 cut(s) 37, 343
HpyCH4IV ACGT 3 cut(s) 99, 138, 411
HpyCH4V TGCA 4 cut(s) 13, 154, 237, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 46, 282
HpySE526I ACGT 3 cut(s) 99, 138, 411
Hsp92II CATG 4 cut(s) 73, 158, 176, 231
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 4 cut(s) 25, 112, 208, 303
LguI GCTCTTC 2 cut(s) 192, 399
LpnPI CCDG 8 cut(s) 105, 132, 219, 223, 262, 287, 294, 409
Lsp1109I GCAGC 2 cut(s) 267, 428
LweI GCATC 1 cut(s) 40
MaeII ACGT 3 cut(s) 99, 138, 411
MaeIII GTNAC 1 cut(s) 56
MalI GATC 4 cut(s) 27, 114, 210, 305
MboI GATC 4 cut(s) 25, 112, 208, 303
MboII GAAGA 6 cut(s) 107, 161, 209, 365, 373, 416
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 417
MnlI CCTC 4 cut(s) 17, 97, 127, 213
MseI TTAA 3 cut(s) 41, 219, 332
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 2 cut(s) 274, 396
MspR9I CCNGG 2 cut(s) 120, 397
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 397
NdeII GATC 4 cut(s) 25, 112, 208, 303
NlaIII CATG 4 cut(s) 73, 158, 176, 231
NlaIV GGNNCC 1 cut(s) 27
NspV TTCGAA 1 cut(s) 105
PciSI GCTCTTC 2 cut(s) 192, 399
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 292
PflFI GACNNNGTC 1 cut(s) 426
PkrI GCNGC 2 cut(s) 257, 443
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 341
SapI GCTCTTC 2 cut(s) 192, 399
SaqAI TTAA 3 cut(s) 41, 219, 332
SatI GCNGC 2 cut(s) 256, 442
Sau3AI GATC 4 cut(s) 25, 112, 208, 303
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 2 cut(s) 120, 397
SduI GDGCHC 1 cut(s) 411
SetI ASST 9 cut(s) 47, 89, 102, 141, 147, 219, 260, 297, 414
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 235
SfuI TTCGAA 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 1 cut(s) 108
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 118, 395
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 37, 343
TaiI ACGT 3 cut(s) 102, 141, 414
TaqI TCGA 2 cut(s) 89, 105
TaqII GACCGA 1 cut(s) 416
TasI AATT 1 cut(s) 108
Tru1I TTAA 3 cut(s) 41, 219, 332
Tru9I TTAA 3 cut(s) 41, 219, 332
TscAI CASTG 3 cut(s) 239, 256, 348
TseI GCWGC 2 cut(s) 255, 441
TspDTI ATGAA 4 cut(s) 161, 171, 210, 417
TspRI CASTG 3 cut(s) 239, 256, 348
Tth111I GACNNNGTC 1 cut(s) 426
VspI ATTAAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.