RLG00000032699

Class I heat shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016287
Physical Location & Seq
Forward (+)
17974528 .. 17975351
824 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032699

Sequence Viewer

Length: 492 bp
ATGTCACATTACTCTCGTAACATTCTATTAGAAACGAAGACTTCCAAGACCTTTCAAGCTCCTACCAGAAAAGTTTTCAACTCAGATTTGGACGATACTCAAATGGACTGGAAGGAGACCTCGAACTCCCACGTTTTCGAAATTGATCTTCCTGGCCTTACAAAAGAGGACGTGAAGCTTGAACTGCATGAAGACAGAGTGCTTCATGTTAGTGCCGAGAGAAAGGATGAAGAGCCTTCTGCAGAGGATCAGAAGATTAAGGAGACGTGGCACTGCAGGGAGAGATCAAGTGGCAGCTTCTCAAAGCATTTCCGGTTGCCTGAGAATGCCAAGGTTGATGAGATTAAGGCTTCAATGCGTGATGGGGTGTTAGTCATTACGGTGCCAAAGGAGGGCTTGAAGGAAAAGCCTAAACACAAAGAAGTTGAGATCTCGGGGGATGAAGAGCACGTTTCTAAAGGACTTGGTCGTTTTGTGTGCTGCAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

164

Amino Acids

18.73

Weight (kDa)

6.08

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 36 - 145 3.2e-26 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016287)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13900
malus_domestica MD05G1240300.v1.1 MD10G1218300.v1.1
prunus_persica Prupe.4G125800_v2.0.a1
pyrus_communis pycom05g21630
rosa_chinensis RchiOBHm_Chr5g0023111
rosa_laevigata RLG00000032699
rosa_roxburghii Rroxscaffold_1G00056240
rosa_rugosa Rorug05G0077200
rosa_samantha Rh5AG163300 Rh5BG162600 Rh5CG177500 Rh5DG163900
rosa_wichuraiana Rw5G014730 Rw5G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AclWI GGATC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 5 cut(s) 56, 79, 182, 354, 400
AjiI CACGTC 2 cut(s) 172, 267
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 59, 178, 297, 488
AluI AGCT 4 cut(s) 59, 178, 297, 488
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 110, 257
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 294, 480
AsuII TTCGAA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 433
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 44, 198
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 306, 467
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 110, 257
BfmI CTRYAG 2 cut(s) 240, 274
BglII AGATCT 1 cut(s) 429
BisI GCNGC 2 cut(s) 295, 481
BlsI GCNGC 2 cut(s) 296, 482
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 2 cut(s) 172, 267
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 44, 198
Bpu14I TTCGAA 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 232, 445
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 96, 312
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 306, 467
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 2 cut(s) 110, 257
BsmBI CGTCTC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 145, 247, 284, 429
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 95, 313
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 2 cut(s) 244, 278
BspPI GGATC 1 cut(s) 255
BspQI GCTCTTC 2 cut(s) 225, 438
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 145, 247, 284, 429
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 225, 438
BstBI TTCGAA 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 82, 321
BstF5I GGATG 2 cut(s) 232, 445
BstKTI GATC 4 cut(s) 148, 250, 287, 432
BstMAI GTCTC 2 cut(s) 110, 257
BstMBI GATC 4 cut(s) 145, 247, 284, 429
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 240, 274
BstV1I GCAGC 2 cut(s) 306, 467
BstV2I GAAGAC 2 cut(s) 44, 198
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 1 cut(s) 156
BtrI CACGTC 2 cut(s) 172, 267
BtsCI GGATG 2 cut(s) 232, 445
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
CviAII CATG 2 cut(s) 188, 206
CviJI RGCY 9 cut(s) 59, 156, 178, 235, 297, 350, 396, 409, 488
CviKI_1 RGCY 9 cut(s) 59, 156, 178, 235, 297, 350, 396, 409, 488
DdeI CTNAG 2 cut(s) 82, 321
DpnI GATC 4 cut(s) 147, 249, 286, 431
DpnII GATC 4 cut(s) 145, 247, 284, 429
Eam1104I CTCTTC 2 cut(s) 225, 438
EarI CTCTTC 2 cut(s) 225, 438
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 191, 209
FaiI YATR 2 cut(s) 189, 207
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FatI CATG 2 cut(s) 187, 205
Fnu4HI GCNGC 2 cut(s) 295, 481
FokI GGATG 2 cut(s) 239, 452
Fsp4HI GCNGC 2 cut(s) 295, 481
GluI GCNGC 2 cut(s) 295, 481
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 313
Hin1II CATG 2 cut(s) 191, 209
HindIII AAGCTT 2 cut(s) 176, 486
HpaII CCGG 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 85, 252
HpyAV CCTTC 3 cut(s) 106, 246, 394
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 4 cut(s) 132, 171, 266, 450
HpyCH4V TGCA 4 cut(s) 187, 242, 276, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 82, 321
HpySE526I ACGT 4 cut(s) 132, 171, 266, 450
Hsp92II CATG 2 cut(s) 191, 209
Kzo9I GATC 4 cut(s) 145, 247, 284, 429
LguI GCTCTTC 2 cut(s) 225, 438
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 79, 94, 138, 165, 262, 326, 333
Lsp1109I GCAGC 2 cut(s) 306, 467
MaeII ACGT 4 cut(s) 132, 171, 266, 450
MaeIII GTNAC 2 cut(s) 3, 17
MalI GATC 4 cut(s) 147, 249, 286, 431
MboI GATC 4 cut(s) 145, 247, 284, 429
MboII GAAGA 6 cut(s) 49, 140, 203, 242, 265, 455
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 1 cut(s) 141
MnlI CCTC 4 cut(s) 130, 160, 238, 385
MseI TTAA 3 cut(s) 258, 345, 490
MslI CAYNNNNRTG 2 cut(s) 210, 380
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 4 cut(s) 145, 247, 284, 429
NlaIII CATG 2 cut(s) 191, 209
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 1 cut(s) 138
PciSI GCTCTTC 2 cut(s) 225, 438
PctI GAATGC 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 465
PkrI GCNGC 2 cut(s) 296, 482
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 2 cut(s) 244, 278
PsuI RGATCY 1 cut(s) 429
PsyI GACNNNGTC 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 210, 380
SapI GCTCTTC 2 cut(s) 225, 438
SaqAI TTAA 3 cut(s) 258, 345, 490
SatI GCNGC 2 cut(s) 295, 481
Sau3AI GATC 4 cut(s) 145, 247, 284, 429
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 450
SfcI CTRYAG 2 cut(s) 240, 274
SfuI TTCGAA 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 210, 380
Sse9I AATT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 4 cut(s) 135, 174, 269, 453
TaqI TCGA 2 cut(s) 122, 138
TasI AATT 1 cut(s) 141
Tru1I TTAA 3 cut(s) 258, 345, 490
Tru9I TTAA 3 cut(s) 258, 345, 490
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 294, 480
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 194, 204, 243, 456
TspRI CASTG 1 cut(s) 278
Tth111I GACNNNGTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.