FvH4_3g14451

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018398
Physical Location & Seq
Reverse (-)
8919239 .. 8921355
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14451.t1

Sequence Viewer

Length: 1029 bp
ATGGGTGTCTCAGAAGCTGAGCACCCTGCTATTATTGGAAAAGTATTCAAGGTGATTCAAGTGGCTGTCCCTCGGGTGCCTATTACTGTGGGCATAGTGGACGTGACTGTGACTGCGCCGGACGAGGCCTCGTTATGCAAATTAACAGGTTGGGTTGAGATCGATCGTAAAGAGATGCTTGATGTCAATGGACATATATTGGAGTTTATGGAATCATATAGGGTCGACGATGTAAGGAGACACTATGATGCAGTTAGGCAGGGCTTGAAGCTAGTGAGGCTGGATAGGTTGGAAGCTGCTGTTAGACAGACACCTTGTTTTGTATGTAAGGAGGAACTTACAAATAGGGTAGCTCAGTTGCACTGCTCGCACTGTTACCATCTAGGTTGCATTTCTCGGTGGCGAACAAAAAGTCACCTGTGTCCGTCGTGCCAGCACCCTATGGTGGACGAGCCAGGGAAGCAGTATAGTCAGTTACAGTGGTTCATGCGGTTGGCTAGTGAGTCAGTAGATGAAGGCGACAGTTTGAATCAAATGATCAGGAGCGATTGTTTGTTTTTCGCGGTGCACGATGTTGAGGAGGACCAAAGGGGGATGAGGATTAGCACTTGGCGCCATGGTGATAGAAGGTGGACTAGCCATTTTAAAGATGCGCATAGTAGGGAAATAGTAATTGATCTTGCAGCTTTTGAAGCTAGTGTTGTTGAGTCTGATGGAGAGGTGTTGCTAGTGTACTCTAAGAGGGACTATAAGCCTTGGCACATGTTCAGGCTAGATTGGTTGCAAATGAAATGGGTGAAGGAAATTAGTTTGGTTAAAAGAGTGTTATTTCTTGGTGACACCTCGTTTTTGTATTCTGCAGATGGTGAAATAAAGGATTTAGCTGATCGTATCTATTATCAGGGTTTTCGGAAATCTTACTTCTATCCAATCAAGTCCGGTATTGGTAGACTCCGCAGCAATGCATTGCTACGCCAATCATGCATAAGGGCAACTCCAACGGTAAATAAGACTAGGTGCTGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

343

Amino Acids

39.66

Weight (kDa)

8.24

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 106 - 145 9.5e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14451
rosa_chinensis RchiOBHm_Chr3g0464271
rosa_multiflora Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa Rorug05G0079700
rosa_samantha Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 654
AccB1I GGYRCC 2 cut(s) 76, 612
AccI GTMKAC 2 cut(s) 225, 949
AccII CGCG 1 cut(s) 563
AciI CCGC 3 cut(s) 490, 563, 955
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 5 cut(s) 49, 59, 268, 529, 692
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 7 cut(s) 17, 271, 296, 353, 686, 695, 884
AluI AGCT 7 cut(s) 17, 271, 296, 353, 686, 695, 884
Alw21I GWGCWC 2 cut(s) 24, 570
Alw26I GTCTC 2 cut(s) 13, 232
Alw44I GTGCAC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 3 cut(s) 296, 683, 957
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AspLEI GCGC 3 cut(s) 118, 615, 655
AspS9I GGNCC 1 cut(s) 583
AsuHPI GGTGA 6 cut(s) 64, 407, 632, 808, 848, 878
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 570
BanI GGYRCC 2 cut(s) 76, 612
Bbv12I GWGCWC 2 cut(s) 24, 570
BbvI GCAGC 3 cut(s) 283, 695, 969
BccI CCATC 3 cut(s) 387, 707, 857
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 13, 232
BfaI CTAG 8 cut(s) 272, 383, 498, 636, 696, 728, 773, 1014
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 616
BisI GCNGC 3 cut(s) 297, 684, 958
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 3 cut(s) 298, 685, 959
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 2 cut(s) 78, 614
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 165, 238, 640
Bpu1102I GCTNAGC 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 4 cut(s) 71, 455, 616, 755
BsaWI WCCGGW 1 cut(s) 938
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse3DI GCAATG 2 cut(s) 965, 967
BseBI CCWGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 4 cut(s) 71, 455, 616, 755
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 2 cut(s) 965, 967
BseMII CTCAG 3 cut(s) 9, 24, 368
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 3 cut(s) 283, 695, 969
Bsh1236I CGCG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 2 cut(s) 76, 612
BshVI ATCGAT 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 24, 570
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 2 cut(s) 119, 939
BslFI GGGAC 2 cut(s) 53, 758
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 13, 232
BsmFI GGGAC 2 cut(s) 53, 758
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 24, 570
Bsp143I GATC 5 cut(s) 159, 163, 537, 676, 886
Bsp1720I GCTNAGC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 3 cut(s) 490, 563, 955
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 3 cut(s) 10, 23, 367
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 1 cut(s) 563
BspLI GGNNCC 2 cut(s) 78, 614
BspMAI CTGCAG 1 cut(s) 862
BspT107I GGYRCC 2 cut(s) 76, 612
BsrDI GCAATG 2 cut(s) 965, 967
BssECI CCNNGG 4 cut(s) 71, 455, 616, 755
BssMI GATC 5 cut(s) 159, 163, 537, 676, 886
BssNI GRCGYC 1 cut(s) 613
BssT1I CCWWGG 2 cut(s) 616, 755
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 6 cut(s) 88, 109, 374, 480, 524, 1003
BstACI GRCGYC 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 368, 434
BstDEI CTNAG 4 cut(s) 10, 18, 354, 738
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 563
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 3 cut(s) 118, 615, 655
BstKTI GATC 5 cut(s) 162, 166, 540, 679, 889
BstMAI GTCTC 2 cut(s) 13, 232
BstMBI GATC 5 cut(s) 159, 163, 537, 676, 886
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 6 cut(s) 277, 367, 460, 612, 692, 981
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 3 cut(s) 283, 695, 969
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 616
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 600
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 361, 370, 485
Cac8I GCNNGC 2 cut(s) 368, 434
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 3 cut(s) 118, 615, 655
Cfr13I GGNCC 1 cut(s) 583
ClaI ATCGAT 1 cut(s) 162
Csp6I GTAC 1 cut(s) 733
CviAII CATG 4 cut(s) 487, 617, 763, 981
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 4 cut(s) 10, 18, 354, 738
DinI GGCGCC 1 cut(s) 614
DpnI GATC 5 cut(s) 161, 165, 539, 678, 888
DpnII GATC 5 cut(s) 159, 163, 537, 676, 886
DraI TTTAAA 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 616, 755
Eco147I AGGCCT 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 616, 755
EcoT22I ATGCAT 2 cut(s) 967, 986
EgeI GGCGCC 1 cut(s) 614
EheI GGCGCC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 616, 755
FaeI CATG 4 cut(s) 490, 620, 766, 984
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 2 cut(s) 53, 758
FatI CATG 4 cut(s) 486, 616, 762, 980
FbaI TGATCA 1 cut(s) 537
FblI GTMKAC 2 cut(s) 225, 949
Fnu4HI GCNGC 3 cut(s) 297, 684, 958
FokI GGATG 1 cut(s) 607
Fsp4HI GCNGC 3 cut(s) 297, 684, 958
FspAI RTGCGCAY 1 cut(s) 654
FspBI CTAG 8 cut(s) 272, 383, 498, 636, 696, 728, 773, 1014
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 3 cut(s) 117, 614, 654
GluI GCNGC 3 cut(s) 297, 684, 958
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 1 cut(s) 128
HapII CCGG 2 cut(s) 119, 939
HhaI GCGC 3 cut(s) 118, 615, 655
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 4 cut(s) 490, 620, 766, 984
Hin6I GCGC 3 cut(s) 116, 613, 653
HinP1I GCGC 3 cut(s) 116, 613, 653
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 6 cut(s) 55, 212, 503, 529, 707, 951
HpaII CCGG 2 cut(s) 119, 939
HphI GGTGA 6 cut(s) 64, 407, 632, 808, 848, 878
Hpy166II GTNNAC 7 cut(s) 100, 226, 448, 568, 633, 733, 950
Hpy188I TCNGA 3 cut(s) 13, 712, 912
Hpy188III TCNNGA 1 cut(s) 541
Hpy8I GTNNAC 7 cut(s) 100, 226, 448, 568, 633, 733, 950
Hpy99I CGWCG 2 cut(s) 230, 430
HpyAV CCTTC 3 cut(s) 509, 621, 793
HpyCH4III ACNGT 6 cut(s) 88, 109, 374, 480, 524, 1003
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 6 cut(s) 277, 367, 460, 612, 692, 981
HpyF3I CTNAG 4 cut(s) 10, 18, 354, 738
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 4 cut(s) 490, 620, 766, 984
HspAI GCGC 3 cut(s) 116, 613, 653
KasI GGCGCC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 5 cut(s) 159, 163, 537, 676, 886
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 3 cut(s) 283, 695, 969
LweI GCATC 3 cut(s) 165, 238, 640
MaeI CTAG 8 cut(s) 272, 383, 498, 636, 696, 728, 773, 1014
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 6 cut(s) 103, 109, 374, 413, 474, 836
MalI GATC 5 cut(s) 161, 165, 539, 678, 888
MboI GATC 5 cut(s) 159, 163, 537, 676, 886
MhlI GDGCHC 2 cut(s) 24, 570
MluCI AATT 3 cut(s) 140, 672, 804
Mly113I GGCGCC 1 cut(s) 613
MlyI GAGTC 3 cut(s) 512, 716, 945
MmeI TCCRAC 2 cut(s) 270, 1022
Mph1103I ATGCAT 2 cut(s) 967, 986
MseI TTAA 4 cut(s) 143, 645, 816, 1027
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 2 cut(s) 119, 939
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 6 cut(s) 277, 367, 460, 612, 692, 981
NarI GGCGCC 1 cut(s) 613
NcoI CCATGG 1 cut(s) 616
NdeII GATC 5 cut(s) 159, 163, 537, 676, 886
NlaIII CATG 4 cut(s) 490, 620, 766, 984
NlaIV GGNNCC 2 cut(s) 78, 614
NmuCI GTSAC 4 cut(s) 103, 109, 413, 836
NsbI TGCGCA 1 cut(s) 654
NsiI ATGCAT 2 cut(s) 967, 986
NspI RCATGY 1 cut(s) 766
PceI AGGCCT 1 cut(s) 128
PciI ACATGT 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PfeI GAWTC 3 cut(s) 55, 212, 529
PkrI GCNGC 3 cut(s) 298, 685, 959
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 3 cut(s) 511, 715, 945
PluTI GGCGCC 1 cut(s) 616
PpsI GAGTC 3 cut(s) 511, 715, 945
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 78, 614
PspPI GGNCC 1 cut(s) 583
PstI CTGCAG 1 cut(s) 862
PstNI CAGNNNCTG 1 cut(s) 17
PvuI CGATCG 1 cut(s) 166
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 4 cut(s) 143, 645, 816, 1027
SatI GCNGC 3 cut(s) 297, 684, 958
Sau3AI GATC 5 cut(s) 159, 163, 537, 676, 886
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 3 cut(s) 512, 716, 945
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 2 cut(s) 24, 570
SfaNI GCATC 3 cut(s) 165, 238, 640
SfcI CTRYAG 1 cut(s) 858
SfoI GGCGCC 1 cut(s) 614
SinI GGWCC 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 3 cut(s) 140, 672, 804
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 3 cut(s) 490, 563, 955
SspDI GGCGCC 1 cut(s) 612
SspMI CTAG 8 cut(s) 272, 383, 498, 636, 696, 728, 773, 1014
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 616, 755
TaaI ACNGT 6 cut(s) 88, 109, 374, 480, 524, 1003
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 162, 225
TasI AATT 3 cut(s) 140, 672, 804
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 3 cut(s) 55, 212, 529
Tru1I TTAA 4 cut(s) 143, 645, 816, 1027
Tru9I TTAA 4 cut(s) 143, 645, 816, 1027
TscAI CASTG 3 cut(s) 368, 377, 485
TseFI GTSAC 4 cut(s) 103, 109, 413, 836
TseI GCWGC 3 cut(s) 296, 683, 957
Tsp45I GTSAC 4 cut(s) 103, 109, 413, 836
TspDTI ATGAA 3 cut(s) 475, 528, 803
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 3 cut(s) 368, 377, 485
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 583
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 2 cut(s) 225, 949
XspI CTAG 8 cut(s) 272, 383, 498, 636, 696, 728, 773, 1014
Zsp2I ATGCAT 2 cut(s) 967, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.