Rh3BG133100

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018398
Physical Location & Seq
Forward (+)
11213788 .. 11214722
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG133100.1

Sequence Viewer

Length: 699 bp
ATGATAATCGAGAAGCAAGTTTTCCGTAGCAGAATAACACAGAGAGAAACAAGCAAGCCCCATCGCCTTAATGAAATCCGAATCAGCATGGACTTACTTCCCCTCACACTAAGCCTCTTCAAGCTAAGCGTTCATTGTGTTGGTAGTGCAACAAACATTGTTTATGGTATACCACGTCTTGTAACCCAAAAACAAACGTCGGTTCCTCTCGATATGCTGCCCTACCAAAAGCGCGGGTTCACAAGGCAGATCGCTCAGTATCTTTCCACGATGGGTGTCCCAGAAGATGAGCAGTTCTCTATTATTGCACGAGTATTTGAGGTGATTGAGGACAAGCCTGTCCTCCGGTTGCCTATTACTCTGGCCATGGCGGACGTGACGGTGAGGACTACTCCGGATGGACCGGATGTGTCCTTGTTTGGAAGTCAAATGAAGATCGATGAGGCCACATGGGAATTAATGGAAAGATATAGGAATGGCGATCCTTTGGCCAACTATCGTGATCCAATGATAGTGGAGGCTTTGGATTTTGTGTTACTGGATAGTTTGGAACCTGCTATTAGGCAGACGCCGTGTCTCCTCTGTAAGGAGAGCCCGGATCACTTTGTTCGCTTGCCCTGTTCACATCTTCATCACAAAAGTTGCATTTTCAGGTGGCTGGGATCCTGTCACTTGTGTCCGTCCCTCGTGCCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

232

Amino Acids

26.49

Weight (kDa)

7.04

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14451
rosa_chinensis RchiOBHm_Chr3g0464271
rosa_multiflora Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa Rorug05G0079700
rosa_samantha Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 2 cut(s) 234, 371
AclWI GGATC 5 cut(s) 476, 497, 606, 657, 670
AcoI YGGCCR 2 cut(s) 363, 489
AcyI GRCGYC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 1 cut(s) 121
AhdI GACNNNNNGTC 1 cut(s) 573
AjiI CACGTC 3 cut(s) 176, 376, 696
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 5 cut(s) 476, 497, 606, 657, 670
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 3 cut(s) 363, 444, 489
ApeKI GCWGC 1 cut(s) 217
AseI ATTAAT 1 cut(s) 458
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 334, 394
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 2 cut(s) 365, 491
BamHI GGATCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 596
BauI CACGAG 2 cut(s) 309, 686
BbvI GCAGC 1 cut(s) 204
BccI CCATC 3 cut(s) 69, 265, 392
BceAI ACGGC 1 cut(s) 556
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 1 cut(s) 218
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 401
BmeRI GACNNNNNGTC 1 cut(s) 573
BmgBI CACGTC 3 cut(s) 176, 376, 696
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 3 cut(s) 204, 552, 664
BmrFI CCNGG 1 cut(s) 596
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 376, 408
Bpu1102I GCTNAGC 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 3 cut(s) 345, 394, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 403, 412
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 365, 446, 491
BshVI ATCGAT 1 cut(s) 438
BsiSI CCGG 4 cut(s) 346, 395, 404, 596
BslFI GGGAC 2 cut(s) 263, 667
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 263, 667
BsnI GGCC 3 cut(s) 365, 446, 491
Bsp1286I GDGCHC 1 cut(s) 596
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 6 cut(s) 249, 435, 481, 502, 598, 662
Bsp1720I GCTNAGC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 234, 371
BspANI GGCC 3 cut(s) 365, 446, 491
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 204, 552, 664
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 5 cut(s) 476, 497, 606, 657, 670
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 6 cut(s) 249, 435, 481, 502, 598, 662
BssNAI GTATAC 1 cut(s) 170
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 2 cut(s) 309, 686
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 170
Bst2BI CACGAG 2 cut(s) 309, 686
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 56, 614
BstDEI CTNAG 3 cut(s) 110, 125, 255
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 2 cut(s) 403, 412
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 6 cut(s) 252, 438, 484, 505, 601, 665
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 6 cut(s) 249, 435, 481, 502, 598, 662
BstSCI CCNGG 1 cut(s) 594
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BstZ17I GTATAC 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 3 cut(s) 365, 446, 491
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 3 cut(s) 176, 376, 696
BtsCI GGATG 2 cut(s) 403, 412
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 56, 614
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 438
CseI GACGC 1 cut(s) 577
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 3 cut(s) 88, 367, 450
DdeI CTNAG 3 cut(s) 110, 125, 255
DpnI GATC 6 cut(s) 251, 437, 483, 504, 600, 664
DpnII GATC 6 cut(s) 249, 435, 481, 502, 598, 662
DrdI GACNNNNNNGTC 1 cut(s) 338
DriI GACNNNNNGTC 1 cut(s) 573
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 363, 489
Eam1104I CTCTTC 1 cut(s) 122
Eam1105I GACNNNNNGTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 3 cut(s) 91, 370, 453
FaiI YATR 7 cut(s) 89, 165, 170, 215, 368, 451, 471
FaqI GGGAC 2 cut(s) 263, 667
FatI CATG 3 cut(s) 87, 366, 449
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 410, 419
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 1 cut(s) 218
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 3 cut(s) 365, 446, 491
HapII CCGG 4 cut(s) 346, 395, 404, 596
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 3 cut(s) 91, 370, 453
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 81
HpaII CCGG 4 cut(s) 346, 395, 404, 596
HphI GGTGA 2 cut(s) 334, 394
Hpy166II GTNNAC 3 cut(s) 170, 240, 623
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 10, 209, 395, 500
Hpy8I GTNNAC 3 cut(s) 170, 240, 623
Hpy99I CGWCG 2 cut(s) 202, 697
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 4 cut(s) 175, 197, 375, 695
HpyCH4V TGCA 3 cut(s) 149, 308, 645
HpyF3I CTNAG 3 cut(s) 110, 125, 255
HpySE526I ACGT 4 cut(s) 175, 197, 375, 695
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 3 cut(s) 91, 370, 453
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 6 cut(s) 249, 435, 481, 502, 598, 662
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 4 cut(s) 175, 197, 375, 695
MaeIII GTNAC 4 cut(s) 181, 376, 534, 668
MalI GATC 6 cut(s) 251, 437, 483, 504, 600, 664
MboI GATC 6 cut(s) 249, 435, 481, 502, 598, 662
MboII GAAGA 4 cut(s) 109, 296, 445, 620
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 1 cut(s) 596
MlsI TGGCCA 2 cut(s) 365, 491
MluCI AATT 1 cut(s) 455
MluNI TGGCCA 2 cut(s) 365, 491
Mox20I TGGCCA 2 cut(s) 365, 491
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 2 cut(s) 365, 491
MseI TTAA 2 cut(s) 69, 458
Msp20I TGGCCA 2 cut(s) 365, 491
MspI CCGG 4 cut(s) 346, 395, 404, 596
MspR9I CCNGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 234
NciI CCSGG 1 cut(s) 596
NcoI CCATGG 1 cut(s) 366
NdeII GATC 6 cut(s) 249, 435, 481, 502, 598, 662
NlaIII CATG 3 cut(s) 91, 370, 453
NlaIV GGNNCC 3 cut(s) 204, 552, 664
NmuCI GTSAC 2 cut(s) 376, 668
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 219
PshBI ATTAAT 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 204, 552, 664
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 662
SaqAI TTAA 2 cut(s) 69, 458
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 6 cut(s) 249, 435, 481, 502, 598, 662
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 596
SetI ASST 8 cut(s) 126, 178, 200, 324, 378, 556, 656, 698
SinI GGWCC 1 cut(s) 401
Sse9I AATT 1 cut(s) 455
SsiI CCGC 2 cut(s) 234, 371
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 4 cut(s) 178, 200, 378, 698
TaqI TCGA 3 cut(s) 9, 210, 438
TasI AATT 1 cut(s) 455
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 69, 458
Tru9I TTAA 2 cut(s) 69, 458
TseFI GTSAC 2 cut(s) 376, 668
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 2 cut(s) 376, 668
TspDTI ATGAA 4 cut(s) 87, 122, 446, 620
TspGWI ACGGA 2 cut(s) 14, 669
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 458
XagI CCTNNNNNAGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.