Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018398

Physical Location & Seq

Genomic Coordinates Reverse (-)

6873471 .. 6874646

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTGAAGCGGCACGAGGAGTGGGTAGCTCGACATGGACGAGTTTACAAGGATGCAGAAGAGAAGGTGAAGCGCTTTTTGATCTTCAAGATCAACGTCGAGTTCATAGAAGCTTTTAACAAACAGATGGAGTACCAAGAGTACACACTGAGGTTAAACGAATTTGGAGACCTAACTAACGAGGAGTTTCGAGCAATGCGTAATGGCTACAAGAGCCAATCCTTGTCCAACTCCCTGAAAGCTACAAGTTTTAGGTATGGAAATGTCAGTGATGTGCCTTCTTCAGTGGACTGGAGAGAAAAGGGCGCGGGTGTTGTTGGGCATTTTCAGCAGTTGCAGCTACAGAAGGGATCAACCAGCTTAAAACGCTTAATTCCTCTAGCAGAGCAAGAGCTTGTGGATTGTGACACTGGAGGCAAAGATCACTGTTGTAAAGGTGGTCTAATGGATAATGCCTTCCAATTCATCCAAAGCAACAAGGGCCTAACAACTGAAGCCAATTACCCCTACCAGGGTGTTGACAGAAGTTGCAAAACTCAGAATGCTACATCCCAAGCAGCCTCCATCACTGGGCACGAGGATGTGCCTAAAAACGACGAGAATGCTCTGCTGCAGGCAGTCGCCAACCTGCCTGTTTCTGTTGCCATCGATGCAATACGTGGTGTGTTTACTGGAACCTGTGGTACCAACTTAGACCATGGTGTTGCCGTGGTTGGGTACGGGACTAGTAGTGATGGGACTAAGTATTGGCTGGTGAAGAATTCTTGGGGAACAGGATGGGGAGAGAGTGGATATGTAAGGATGCAAAGGGATGTTCCTGCCATGGAAGGACTCTGTGGAATTGCTATGGACGCTTCTTATCCGACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

290

Amino Acids

32.14

Weight (kDa)

6.11

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	5 - 63	5.3e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	120 - 289	1.8e-51	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14451
rosa_chinensis	RchiOBHm_Chr3g0464271
rosa_multiflora	Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii	Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa	Rorug05G0079700
rosa_samantha	Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	683
AccII	CGCG	1 cut(s)	308
AciI	CCGC	3 cut(s)	10, 308, 867
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	161, 760
AcuI	CTGAAG	3 cut(s)	26, 267, 513
AfaI	GTAC	4 cut(s)	134, 143, 685, 719
AfeI	AGCGCT	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	511, 512, 570, 714
AgsI	TTSAA	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	725
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	6 cut(s)	29, 113, 242, 340, 360, 394
AluI	AGCT	6 cut(s)	29, 113, 242, 340, 360, 394
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	74
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	337, 557, 610
ApoI	RAATTY	2 cut(s)	161, 760
Asp718I	GGTACC	1 cut(s)	683
AspLEI	GCGC	2 cut(s)	75, 308
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	79, 766
BaeGI	GKGCMC	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	683
BauI	CACGAG	2 cut(s)	14, 575
BbvI	GCAGC	3 cut(s)	349, 569, 597
BccI	CCATC	5 cut(s)	121, 572, 653, 728, 771
BceAI	ACGGC	1 cut(s)	692
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	2 cut(s)	380, 726
BfmI	CTRYAG	2 cut(s)	341, 611
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	636
BisI	GCNGC	4 cut(s)	11, 338, 558, 611
BlsI	GCNGC	4 cut(s)	12, 339, 559, 612
Bme1390I	CCNGG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	676, 685
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	43, 640, 792
BmuI	ACTGGG	1 cut(s)	579
BpmI	CTGGAG	2 cut(s)	313, 432
Bsa29I	ATCGAT	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	511, 697, 708, 822
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 512, 570, 714
Bse1I	ACTGG	4 cut(s)	296, 415, 574, 676
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	4 cut(s)	511, 697, 708, 822
BseGI	GGATG	7 cut(s)	58, 465, 548, 586, 782, 807, 817
BseLI	CCNNNNNNNGG	4 cut(s)	511, 512, 570, 714
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	140, 551
BseNI	ACTGG	4 cut(s)	296, 415, 574, 676
BseRI	GAGGAG	2 cut(s)	32, 197
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	349, 569, 597
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	648
BsiEI	CGRYCG	1 cut(s)	867
BslFI	GGGAC	2 cut(s)	736, 751
BslI	CCNNNNNNNGG	4 cut(s)	511, 512, 570, 714
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	736, 751
BsmI	GAATGC	2 cut(s)	547, 607
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	81, 90, 350, 421
Bsp19I	CCATGG	2 cut(s)	697, 822
BspACI	CCGC	3 cut(s)	10, 308, 867
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	141, 550
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	676, 685
BspMAI	CTGCAG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	4 cut(s)	296, 415, 574, 676
BssECI	CCNNGG	4 cut(s)	511, 697, 708, 822
BssMI	GATC	4 cut(s)	81, 90, 350, 421
BssSI	CACGAG	2 cut(s)	14, 575
BssT1I	CCWWGG	2 cut(s)	697, 822
Bst2BI	CACGAG	2 cut(s)	14, 575
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	4 cut(s)	149, 537, 691, 741
BstDSI	CCRYGG	3 cut(s)	697, 708, 822
BstF5I	GGATG	7 cut(s)	58, 465, 548, 586, 782, 807, 817
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 308
BstKTI	GATC	4 cut(s)	84, 93, 353, 424
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	81, 90, 350, 421
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 213, 328, 337, 366, 480, 650, 851
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	341, 611
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	3 cut(s)	349, 569, 597
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	483
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	3 cut(s)	697, 708, 822
BtsCI	GGATG	7 cut(s)	58, 465, 548, 586, 782, 807, 817
BtsIMutI	CAGTG	6 cut(s)	146, 274, 291, 408, 424, 567
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	2 cut(s)	75, 308
Cfr13I	GGNCC	1 cut(s)	481
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	4 cut(s)	133, 142, 684, 718
CviAII	CATG	4 cut(s)	35, 698, 823, 870
CviQI	GTAC	4 cut(s)	133, 142, 684, 718
DdeI	CTNAG	4 cut(s)	149, 537, 691, 741
DpnI	GATC	4 cut(s)	83, 92, 352, 423
DpnII	GATC	4 cut(s)	81, 90, 350, 421
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	697, 822
Eco31I	GGTCTC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	74
Eco57I	CTGAAG	3 cut(s)	26, 267, 513
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	697, 822
ErhI	CCWWGG	2 cut(s)	697, 822
FaeI	CATG	4 cut(s)	38, 701, 826, 873
FaiI	YATR	8 cut(s)	36, 107, 258, 699, 795, 824, 848, 871
FaqI	GGGAC	2 cut(s)	736, 751
FatI	CATG	4 cut(s)	34, 697, 822, 869
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	11, 338, 558, 611
FokI	GGATG	7 cut(s)	65, 452, 535, 593, 789, 814, 824
Fsp4HI	GCNGC	4 cut(s)	11, 338, 558, 611
FspBI	CTAG	2 cut(s)	380, 726
GlaI	GCGC	2 cut(s)	74, 307
GluI	GCNGC	4 cut(s)	11, 338, 558, 611
GsuI	CTGGAG	2 cut(s)	313, 432
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	2 cut(s)	75, 308
Hin1II	CATG	4 cut(s)	38, 701, 826, 873
Hin6I	GCGC	2 cut(s)	73, 306
HinP1I	GCGC	2 cut(s)	73, 306
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	1 cut(s)	831
HphI	GGTGA	2 cut(s)	79, 766
Hpy166II	GTNNAC	5 cut(s)	46, 144, 289, 520, 669
Hpy188I	TCNGA	2 cut(s)	540, 864
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	5 cut(s)	46, 144, 289, 520, 669
Hpy99I	CGWCG	2 cut(s)	101, 599
HpyAV	CCTTC	5 cut(s)	58, 288, 340, 466, 821
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	96, 658
HpyCH4V	TGCA	6 cut(s)	56, 337, 531, 613, 653, 805
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 213, 328, 337, 366, 480, 650, 851
HpyF3I	CTNAG	4 cut(s)	149, 537, 691, 741
HpySE526I	ACGT	2 cut(s)	96, 658
Hsp92II	CATG	4 cut(s)	38, 701, 826, 873
HspAI	GCGC	2 cut(s)	73, 306
KpnI	GGTACC	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	81, 90, 350, 421
Lsp1109I	GCAGC	3 cut(s)	349, 569, 597
LweI	GCATC	3 cut(s)	43, 640, 792
MaeI	CTAG	2 cut(s)	380, 726
MaeII	ACGT	2 cut(s)	96, 658
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	83, 92, 352, 423
MboI	GATC	4 cut(s)	81, 90, 350, 421
MboII	GAAGA	4 cut(s)	71, 76, 273, 769
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	6 cut(s)	161, 372, 461, 499, 760, 840
MlyI	GAGTC	1 cut(s)	825
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	7 cut(s)	10, 144, 175, 387, 407, 571, 571
MseI	TTAA	4 cut(s)	117, 155, 362, 371
MslI	CAYNNNNRTG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	2 cut(s)	547, 607
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	8 cut(s)	10, 213, 328, 337, 366, 480, 650, 851
NcoI	CCATGG	2 cut(s)	697, 822
NdeII	GATC	4 cut(s)	81, 90, 350, 421
NlaIII	CATG	4 cut(s)	38, 701, 826, 873
NlaIV	GGNNCC	2 cut(s)	676, 685
NmuCI	GTSAC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 196
PctI	GAATGC	2 cut(s)	547, 607
PkrI	GCNGC	4 cut(s)	12, 339, 559, 612
PleI	GAGTC	1 cut(s)	825
PpsI	GAGTC	1 cut(s)	825
Ppu21I	YACGTR	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	676, 685
PspPI	GGNCC	1 cut(s)	481
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	1 cut(s)	615
RsaI	GTAC	4 cut(s)	134, 143, 685, 719
RsaNI	GTAC	4 cut(s)	133, 142, 684, 718
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	117, 155, 362, 371
SatI	GCNGC	4 cut(s)	11, 338, 558, 611
Sau3AI	GATC	4 cut(s)	81, 90, 350, 421
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	3 cut(s)	43, 640, 792
SfcI	CTRYAG	2 cut(s)	341, 611
SmiMI	CAYNNNNRTG	1 cut(s)	579
SpeI	ACTAGT	1 cut(s)	725
Sse9I	AATT	6 cut(s)	161, 372, 461, 499, 760, 840
SsiI	CCGC	3 cut(s)	10, 308, 867
SspMI	CTAG	2 cut(s)	380, 726
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	697, 822
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	99, 661
TaqI	TCGA	4 cut(s)	31, 99, 190, 648
TasI	AATT	6 cut(s)	161, 372, 461, 499, 760, 840
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	4 cut(s)	117, 155, 362, 371
Tru9I	TTAA	4 cut(s)	117, 155, 362, 371
TscAI	CASTG	6 cut(s)	153, 274, 291, 415, 431, 574
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	337, 557, 610
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	94, 454
TspRI	CASTG	6 cut(s)	153, 274, 291, 415, 431, 574
XapI	RAATTY	2 cut(s)	161, 760
XspI	CTAG	2 cut(s)	380, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.