RchiOBHm_Chr3g0464271

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018398
Physical Location & Seq
Forward (+)
11410605 .. 11411594
990 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43055

Sequence Viewer

Length: 612 bp
ATGGACTTACTTCCCCTCACACTAAGCCTCTTCAAGCTAAGCGTTCATTGTGTTGGTAGTGCAACAAACATTGTTTATGGTATACCACGTCTTGTAACCCAAAAACAAACGTCGGTTCCTCTCGATATGCTGCCCTACCAAAAGCGCGGGTTCACAAGGCAGATCGCTCAGTATCTTTCCACGATGGGTGTCCCAGAAGATGAGCAGTTCTCTATTATTGCACGAGTATTTGAGGTGATTGAGGACAAGCCTGTCCTCCGGTTGCCTATTACTCTGGCCATGGCGGACGTGACGGTGAGGACTACTCCGGATGGACCGGATGTGTCCTTGTTTGGAAGTCAAATGAAGATCGATGAGGCCACATGGGAATTAATGGAAAGATATAGGAATGGCGATCCTTTGGCCAACTATCGTGATCCAATGATAGTGGAGGCTTTGGATTTTGTGTTACTGGATAGTTTGGAACCTGCTATTAGGCAGACGCCGTGTCTCCTCTGTAAGGAGAGCCCGGATCACTTTGTTCGCTTGCCCTGTTCACATCTTCATCACAAAAGTTGCATTTTCAGGTGGCTGGGATCCTGTCACTTGTGTCCGTCCCTCGTGCCGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

203

Amino Acids

22.94

Weight (kDa)

5.84

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14451
rosa_chinensis RchiOBHm_Chr3g0464271
rosa_multiflora Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa Rorug05G0079700
rosa_samantha Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 2 cut(s) 147, 284
AclWI GGATC 5 cut(s) 389, 410, 519, 570, 583
AcoI YGGCCR 2 cut(s) 276, 402
AcyI GRCGYC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 486
AjiI CACGTC 3 cut(s) 89, 289, 609
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 5 cut(s) 389, 410, 519, 570, 583
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 3 cut(s) 276, 357, 402
ApeKI GCWGC 1 cut(s) 130
AseI ATTAAT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 247, 307
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 2 cut(s) 278, 404
BamHI GGATCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 2 cut(s) 222, 599
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 178, 305
BceAI ACGGC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 314
BmeRI GACNNNNNGTC 1 cut(s) 486
BmgBI CACGTC 3 cut(s) 89, 289, 609
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 3 cut(s) 117, 465, 577
BmrFI CCNGG 1 cut(s) 509
BplI GAGNNNNNCTC 4 cut(s) 194, 226, 289, 321
Bpu1102I GCTNAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 509
Bsa29I ATCGAT 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 3 cut(s) 258, 307, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 316, 325
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 278, 359, 404
BshVI ATCGAT 1 cut(s) 351
BsiSI CCGG 4 cut(s) 259, 308, 317, 509
BslFI GGGAC 2 cut(s) 176, 580
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 176, 580
BsnI GGCC 3 cut(s) 278, 359, 404
Bsp1286I GDGCHC 1 cut(s) 509
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 6 cut(s) 162, 348, 394, 415, 511, 575
Bsp1720I GCTNAGC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 2 cut(s) 147, 284
BspANI GGCC 3 cut(s) 278, 359, 404
BspCNI CTCAG 1 cut(s) 181
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 117, 465, 577
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 5 cut(s) 389, 410, 519, 570, 583
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 6 cut(s) 162, 348, 394, 415, 511, 575
BssNAI GTATAC 1 cut(s) 83
BssNI GRCGYC 1 cut(s) 482
BssSI CACGAG 2 cut(s) 222, 599
BssT1I CCWWGG 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 83
Bst2BI CACGAG 2 cut(s) 222, 599
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 23, 38, 168
BstDSI CCRYGG 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 316, 325
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 6 cut(s) 165, 351, 397, 418, 514, 578
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 6 cut(s) 162, 348, 394, 415, 511, 575
BstSCI CCNGG 1 cut(s) 507
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BstZ17I GTATAC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 3 cut(s) 278, 359, 404
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 279
BtrI CACGTC 3 cut(s) 89, 289, 609
BtsCI GGATG 2 cut(s) 316, 325
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 527
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 1 cut(s) 490
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 2 cut(s) 280, 363
CviJI RGCY 9 cut(s) 27, 37, 250, 278, 359, 404, 434, 507, 571
CviKI_1 RGCY 9 cut(s) 27, 37, 250, 278, 359, 404, 434, 507, 571
DdeI CTNAG 3 cut(s) 23, 38, 168
DpnI GATC 6 cut(s) 164, 350, 396, 417, 513, 577
DpnII GATC 6 cut(s) 162, 348, 394, 415, 511, 575
DrdI GACNNNNNNGTC 1 cut(s) 251
DriI GACNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 276, 402
Eam1104I CTCTTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 283, 366
FaiI YATR 6 cut(s) 78, 83, 128, 281, 364, 384
FaqI GGGAC 2 cut(s) 176, 580
FatI CATG 2 cut(s) 279, 362
FauI CCCGC 1 cut(s) 140
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 2 cut(s) 323, 332
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 1 cut(s) 131
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 575
HaeIII GGCC 3 cut(s) 278, 359, 404
HapII CCGG 4 cut(s) 259, 308, 317, 509
HgaI GACGC 1 cut(s) 490
HhaI GCGC 1 cut(s) 147
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 2 cut(s) 283, 366
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HpaII CCGG 4 cut(s) 259, 308, 317, 509
HphI GGTGA 2 cut(s) 247, 307
Hpy166II GTNNAC 3 cut(s) 83, 153, 536
Hpy188III TCNNGA 3 cut(s) 122, 308, 413
Hpy8I GTNNAC 3 cut(s) 83, 153, 536
Hpy99I CGWCG 2 cut(s) 115, 610
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 4 cut(s) 88, 110, 288, 608
HpyCH4V TGCA 3 cut(s) 62, 221, 558
HpyF3I CTNAG 3 cut(s) 23, 38, 168
HpySE526I ACGT 4 cut(s) 88, 110, 288, 608
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 2 cut(s) 283, 366
HspAI GCGC 1 cut(s) 145
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 162, 348, 394, 415, 511, 575
Lsp1109I GCAGC 1 cut(s) 117
MaeII ACGT 4 cut(s) 88, 110, 288, 608
MaeIII GTNAC 4 cut(s) 94, 289, 447, 581
MalI GATC 6 cut(s) 164, 350, 396, 417, 513, 577
MboI GATC 6 cut(s) 162, 348, 394, 415, 511, 575
MboII GAAGA 4 cut(s) 22, 209, 358, 533
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 509
MlsI TGGCCA 2 cut(s) 278, 404
MluCI AATT 1 cut(s) 368
MluNI TGGCCA 2 cut(s) 278, 404
Mox20I TGGCCA 2 cut(s) 278, 404
MroI TCCGGA 1 cut(s) 307
MscI TGGCCA 2 cut(s) 278, 404
MseI TTAA 1 cut(s) 371
Msp20I TGGCCA 2 cut(s) 278, 404
MspI CCGG 4 cut(s) 259, 308, 317, 509
MspR9I CCNGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 147
NciI CCSGG 1 cut(s) 509
NcoI CCATGG 1 cut(s) 279
NdeII GATC 6 cut(s) 162, 348, 394, 415, 511, 575
NlaIII CATG 2 cut(s) 283, 366
NlaIV GGNNCC 3 cut(s) 117, 465, 577
NmuCI GTSAC 2 cut(s) 289, 581
PkrI GCNGC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 117, 465, 577
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 575
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 6 cut(s) 162, 348, 394, 415, 511, 575
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 509
SetI ASST 8 cut(s) 39, 91, 113, 237, 291, 469, 569, 611
SinI GGWCC 1 cut(s) 314
Sse9I AATT 1 cut(s) 368
SsiI CCGC 2 cut(s) 147, 284
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 4 cut(s) 91, 113, 291, 611
TaqI TCGA 2 cut(s) 123, 351
TasI AATT 1 cut(s) 368
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseFI GTSAC 2 cut(s) 289, 581
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 2 cut(s) 289, 581
TspDTI ATGAA 3 cut(s) 35, 359, 533
TspGWI ACGGA 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 314
VspI ATTAAT 1 cut(s) 371
XagI CCTNNNNNAGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.